hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20080304/iprscan-20080304-23391256/chunk_1/iprscan-20080304-23391256.nocrc
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Query sequence: pF1KB4158
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00069.15.ls Protein kinase domain 348.8 8.4e-102 1
PF00069.15.fs Protein kinase domain 346.9 3.1e-101 1
PF08332.1.ls Calcium/calmodulin dependent protein kina 324.6 1.7e-94 1
PF08332.1.fs Calcium/calmodulin dependent protein kina 322.5 6.7e-94 1
PF07714.7.fs Protein tyrosine kinase 37.3 1e-10 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF07714.7.fs 1/2 14 98 .. 1 97 [. 30.7 8.3e-09
PF00069.15.fs 1/1 14 272 .. 1 287 [] 346.9 3.1e-101
PF00069.15.ls 1/1 14 272 .. 1 287 [] 348.8 8.4e-102
PF08332.1.ls 1/1 360 487 .. 1 128 [] 324.6 1.7e-94
PF08332.1.fs 1/1 360 487 .. 1 128 [] 322.5 6.7e-94
Alignments of top-scoring domains:
PF07714.7.fs: domain 1 of 2, from 14 to 98: score 30.7, E = 8.3e-09
*->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei
+l ++LG+GaF +V ++ t+++ A K+++ + + s ++
pF1KB4158 14 YQLFEELGKGAFSVVRRCMKI----PTGQEYAAKIInTK-KLSARD- 54
eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd
++++ rEA+i + l +HpNiVrL+ +++ ++ +y+V+ ++ gG
pF1KB4158 55 -HQKLEREARICRLL-KHPNIVRLHDSISE-EGF----HYLVFDLVTGGE 97
L<-*
L
pF1KB4158 98 L 98
PF00069.15.fs: domain 1 of 1, from 14 to 272: score 346.9, E = 3.1e-101
*->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
y+l e lG+G+f++V++++++ tg+++A Kii+ +k + ++ + r
pF1KB4158 14 YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
E++i + L+HpNIvrl+d+ +++ ylV++++ gG +Lf+ +
pF1KB4158 61 --EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGG----ELFEDIV- 103
trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILld..nn
++ + se +a +++ Qil+ ++++H ngi+HRDLKPeN+Ll ++++
pF1KB4158 104 --AREYY--SEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLAskSK 149
gvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtk
g +K+aDFGlA + + ++ +f+GTp+Y++PEvl+ +yg++
pF1KB4158 150 GAA---VKLADFGLAIEV-QgDQQaWFGFAGTPGYLSPEVLR-KDPYGKP 194
vDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewd
vD+W++Gvily+ll G+pPF++e dq l+++i+ + ++f+spewd
pF1KB4158 195 VDMWACGVILYILLVGYPPFWDE-----DQHRLYQQIKAGAYDFPSPEWD 239
sisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
++ +eakdLi+k+L+ +P+kR+ta e+l+HPw+
pF1KB4158 240 TVT-----------PEAKDLINKMLTINPAKRITASEALKHPWI 272
PF00069.15.ls: domain 1 of 1, from 14 to 272: score 348.8, E = 8.4e-102
*->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
y+l e lG+G+f++V++++++ tg+++A Kii+ +k + ++ + r
pF1KB4158 14 YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
E++i + L+HpNIvrl+d+ +++ ylV++++ gG +Lf+ +
pF1KB4158 61 --EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGG----ELFEDIV- 103
trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILld..nn
++ + se +a +++ Qil+ ++++H ngi+HRDLKPeN+Ll ++++
pF1KB4158 104 --AREYY--SEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLAskSK 149
gvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtk
g +K+aDFGlA + + ++ +f+GTp+Y++PEvl+ +yg++
pF1KB4158 150 GAA---VKLADFGLAIEV-QgDQQaWFGFAGTPGYLSPEVLR-KDPYGKP 194
vDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewd
vD+W++Gvily+ll G+pPF++e dq l+++i+ + ++f+spewd
pF1KB4158 195 VDMWACGVILYILLVGYPPFWDE-----DQHRLYQQIKAGAYDFPSPEWD 239
sisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
++ +eakdLi+k+L+ +P+kR+ta e+l+HPw+
pF1KB4158 240 TVT-----------PEAKDLINKMLTINPAKRITASEALKHPWI 272
PF08332.1.ls: domain 1 of 1, from 360 to 487: score 324.6, E = 1.7e-94
*->eeqEivkvterlieAIaeGDfetYtklcdpdltaFePealgnlveGl
++qEi+kvte+lieAI++GDfe+Ytk+cdp+ltaFePealgnlveG+
pF1KB4158 360 RKQEIIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGM 406
eFHrFYFEnfLgkrkkavhttilnphVhllGDdaAciAYvrLtqlmDknG
+FHrFYFEn+L+k++k++ht+ilnphVhl+GDdaAciAY+rLtq+mD +G
pF1KB4158 407 DFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMDGSG 456
lahtvqseETRVweKrdGkWqiVHvHrSaap<-*
+++t+qseETRVw++rdGkWq+VH+HrS++p
pF1KB4158 457 MPKTMQSEETRVWHRRDGKWQNVHFHRSGSP 487
PF08332.1.fs: domain 1 of 1, from 360 to 487: score 322.5, E = 6.7e-94
*->eeqEivkvterlieAIaeGDfetYtklcdpdltaFePealgnlveGl
++qEi+kvte+lieAI++GDfe+Ytk+cdp+ltaFePealgnlveG+
pF1KB4158 360 RKQEIIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGM 406
eFHrFYFEnfLgkrkkavhttilnphVhllGDdaAciAYvrLtqlmDknG
+FHrFYFEn+L+k++k++ht+ilnphVhl+GDdaAciAY+rLtq+mD +G
pF1KB4158 407 DFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMDGSG 456
lahtvqseETRVweKrdGkWqiVHvHrSaap<-*
+++t+qseETRVw++rdGkWq+VH+HrS++p
pF1KB4158 457 MPKTMQSEETRVWHRRDGKWQNVHFHRSGSP 487
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