Result of FASTA (ccds) for pFN21AB5432
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5432, 609 aa
  1>>>pF1KB5432 609 - 609 aa - 609 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5729+/-0.00091; mu= 18.3277+/- 0.055
 mean_var=74.6715+/-15.090, 0's: 0 Z-trim(106.2): 13  B-trim: 85 in 1/50
 Lambda= 0.148421
 statistics sampled from 8816 (8823) to 8816 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.271), width:  16
 Scan time:  3.690

The best scores are:                                      opt bits E(32554)
CCDS14021.1 XRCC6 gene_id:2547|Hs108|chr22         ( 609) 3974 860.6       0
CCDS74871.1 XRCC6 gene_id:2547|Hs108|chr22         ( 559) 3551 770.0       0
CCDS74870.1 XRCC6 gene_id:2547|Hs108|chr22         ( 568) 3303 716.9 1.8e-206


>>CCDS14021.1 XRCC6 gene_id:2547|Hs108|chr22              (609 aa)
 initn: 3974 init1: 3974 opt: 3974  Z-score: 4596.5  bits: 860.6 E(32554):    0
Smith-Waterman score: 3974; 100.0% identity (100.0% similar) in 609 aa overlap (1-609:1-609)

               10        20        30        40        50        60
pF1KB5 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
              550       560       570       580       590       600

                
pF1KB5 EALTKHFQD
       :::::::::
CCDS14 EALTKHFQD
                

>>CCDS74871.1 XRCC6 gene_id:2547|Hs108|chr22              (559 aa)
 initn: 3551 init1: 3551 opt: 3551  Z-score: 4107.5  bits: 770.0 E(32554):    0
Smith-Waterman score: 3551; 100.0% identity (100.0% similar) in 544 aa overlap (66-609:16-559)

          40        50        60        70        80        90     
pF1KB5 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKN
                                     ::::::::::::::::::::::::::::::
CCDS74                MKKQRKNKKRTLKQVCIQSVYISKIISSDRDLLAVVFYGTEKDKN
                              10        20        30        40     

         100       110       120       130       140       150     
pF1KB5 SVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFS
          50        60        70        80        90       100     

         160       170       180       190       200       210     
pF1KB5 DVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISL
         110       120       130       140       150       160     

         220       230       240       250       260       270     
pF1KB5 FYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYN
         170       180       190       200       210       220     

         280       290       300       310       320       330     
pF1KB5 LVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETE
         230       240       250       260       270       280     

         340       350       360       370       380       390     
pF1KB5 ELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVA
         290       300       310       320       330       340     

         400       410       420       430       440       450     
pF1KB5 ALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMAT
         350       360       370       380       390       400     

         460       470       480       490       500       510     
pF1KB5 PEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMN
         410       420       430       440       450       460     

         520       530       540       550       560       570     
pF1KB5 KRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGK
         470       480       490       500       510       520     

         580       590       600         
pF1KB5 FTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD
       ::::::::::::::::::::::::::::::::::
CCDS74 FTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD
         530       540       550         

>>CCDS74870.1 XRCC6 gene_id:2547|Hs108|chr22              (568 aa)
 initn: 3303 init1: 3303 opt: 3303  Z-score: 3820.4  bits: 716.9 E(32554): 1.8e-206
Smith-Waterman score: 3625; 93.3% identity (93.3% similar) in 609 aa overlap (1-609:1-568)

               10        20        30        40        50        60
pF1KB5 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD
       :::::                                         ::::::::::::::
CCDS74 DMSIQ-----------------------------------------ELDNPGAKRILELD
                                                        70         

              130       140       150       160       170       180
pF1KB5 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
      80        90       100       110       120       130         

              190       200       210       220       230       240
pF1KB5 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
     140       150       160       170       180       190         

              250       260       270       280       290       300
pF1KB5 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
     200       210       220       230       240       250         

              310       320       330       340       350       360
pF1KB5 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
     260       270       280       290       300       310         

              370       380       390       400       410       420
pF1KB5 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
     320       330       340       350       360       370         

              430       440       450       460       470       480
pF1KB5 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
     380       390       400       410       420       430         

              490       500       510       520       530       540
pF1KB5 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
     440       450       460       470       480       490         

              550       560       570       580       590       600
pF1KB5 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
     500       510       520       530       540       550         

                
pF1KB5 EALTKHFQD
       :::::::::
CCDS74 EALTKHFQD
     560        




609 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:19:28 2016 done: Thu Nov  3 17:19:28 2016
 Total Scan time:  3.690 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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