hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080305/iprscan-20080305-16382946/chunk_1/iprscan-20080305-16382946.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB5244 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00010.16.ls Helix-loop-helix DNA-binding domain 79.8 7.9e-21 1 PF00010.16.fs Helix-loop-helix DNA-binding domain 77.8 2.7e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00010.16.fs 1/1 102 154 .. 1 53 [] 77.8 2.7e-20 PF00010.16.ls 1/1 102 154 .. 1 53 [] 79.8 7.9e-21 Alignments of top-scoring domains: PF00010.16.fs: domain 1 of 1, from 102 to 154: score 77.8, E = 2.7e-20 *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve rR+++narER+R++ +N a++ Lr+++P+ ++ +KlsK+e+LrlA + pF1KB5244 102 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKN 148 YIksLq<-* YI L pF1KB5244 149 YIWALS 154 PF00010.16.ls: domain 1 of 1, from 102 to 154: score 79.8, E = 7.9e-21 *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve rR+++narER+R++ +N a++ Lr+++P+ ++ +KlsK+e+LrlA + pF1KB5244 102 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKN 148 YIksLq<-* YI L pF1KB5244 149 YIWALS 154 //