Result of FASTA (omim) for
pFN21AB5110
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5110, 638 aa
1>>>pF1KB5110 638 - 638 aa - 638 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8300+/-0.000468; mu= 13.1776+/- 0.029
mean_var=133.8894+/-26.239, 0's: 0 Z-trim(113.2): 13 B-trim: 238 in 1/55
Lambda= 0.110841
statistics sampled from 22419 (22431) to 22419 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.263), width: 16
Scan time: 10.800
The best scores are: opt bits E(85289)
NP_003130 (OMIM: 182180) signal recognition partic ( 638) 4109 669.3 1.1e-191
XP_016873668 (OMIM: 182180) PREDICTED: signal reco ( 634) 3857 629.0 1.5e-179
NP_001171313 (OMIM: 182180) signal recognition par ( 610) 3661 597.6 4.1e-170
>>NP_003130 (OMIM: 182180) signal recognition particle r (638 aa)
initn: 4109 init1: 4109 opt: 4109 Z-score: 3562.0 bits: 669.3 E(85289): 1.1e-191
Smith-Waterman score: 4109; 100.0% identity (100.0% similar) in 638 aa overlap (1-638:1-638)
10 20 30 40 50 60
pF1KB5 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
550 560 570 580 590 600
610 620 630
pF1KB5 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
::::::::::::::::::::::::::::::::::::::
NP_003 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
610 620 630
>>XP_016873668 (OMIM: 182180) PREDICTED: signal recognit (634 aa)
initn: 3857 init1: 3857 opt: 3857 Z-score: 3344.3 bits: 629.0 E(85289): 1.5e-179
Smith-Waterman score: 3857; 100.0% identity (100.0% similar) in 597 aa overlap (1-597:1-597)
10 20 30 40 50 60
pF1KB5 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVNVR
550 560 570 580 590 600
610 620 630
pF1KB5 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
XP_016 LEAGMGVLHKGAEAARKSWLQRFLFLRGFKMHLT
610 620 630
>>NP_001171313 (OMIM: 182180) signal recognition particl (610 aa)
initn: 3914 init1: 3661 opt: 3661 Z-score: 3175.1 bits: 597.6 E(85289): 4.1e-170
Smith-Waterman score: 3862; 95.6% identity (95.6% similar) in 638 aa overlap (1-638:1-610)
10 20 30 40 50 60
pF1KB5 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
:::::::::::::::::::::::::::::::::::::::
NP_001 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQ---------------------
10 20 30
70 80 90 100 110 120
pF1KB5 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------VGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB5 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB5 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB5 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB5 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB5 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB5 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
520 530 540 550 560 570
610 620 630
pF1KB5 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
::::::::::::::::::::::::::::::::::::::
NP_001 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
580 590 600 610
638 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:06:50 2016 done: Thu Nov 3 16:06:52 2016
Total Scan time: 10.800 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]