Result of FASTA (omim) for
pFN21AB4998
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4998, 221 aa
1>>>pF1KB4998 221 - 221 aa - 221 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9941+/-0.000413; mu= -0.5695+/- 0.026
mean_var=392.4985+/-84.966, 0's: 0 Z-trim(123.6): 192 B-trim: 3240 in 2/58
Lambda= 0.064737
statistics sampled from 43373 (43721) to 43373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.513), width: 16
Scan time: 7.140
The best scores are: opt bits E(85289)
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221) 1466 149.8 3.3e-36
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221) 1466 149.8 3.3e-36
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221) 1466 149.8 3.3e-36
XP_016872631 (OMIM: 603269) PREDICTED: serine/argi ( 282) 772 85.1 1.2e-16
NP_115285 (OMIM: 603269) serine/arginine-rich spli ( 282) 772 85.1 1.2e-16
NP_001177934 (OMIM: 605221) serine/arginine-rich s ( 261) 448 54.8 1.5e-07
NP_473357 (OMIM: 605221) serine/arginine-rich spli ( 262) 448 54.8 1.5e-07
NP_001182375 (OMIM: 600572) serine/arginine-rich s ( 226) 437 53.7 2.9e-07
NP_001026854 (OMIM: 600572) serine/arginine-rich s ( 238) 436 53.7 3.2e-07
NP_001287866 (OMIM: 605221) serine/arginine-rich s ( 217) 435 53.5 3.2e-07
NP_001177935 (OMIM: 605221) serine/arginine-rich s ( 173) 369 47.2 2e-05
NP_001287865 (OMIM: 605221) serine/arginine-rich s ( 172) 366 46.9 2.4e-05
NP_001287998 (OMIM: 180740) U1 small nuclear ribon ( 428) 374 48.2 2.5e-05
NP_006616 (OMIM: 605221) serine/arginine-rich spli ( 183) 363 46.7 3.1e-05
NP_001177936 (OMIM: 605221) serine/arginine-rich s ( 182) 362 46.6 3.3e-05
NP_003080 (OMIM: 180740) U1 small nuclear ribonucl ( 437) 349 45.9 0.00013
NP_001177938 (OMIM: 605221) serine/arginine-rich s ( 165) 332 43.7 0.00021
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297) 307 41.7 0.0015
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202) 303 41.1 0.0016
XP_005264541 (OMIM: 600572) PREDICTED: serine/argi ( 235) 304 41.3 0.0016
NP_001273555 (OMIM: 606447) RNA-binding protein wi ( 282) 303 41.3 0.0019
XP_005255105 (OMIM: 606447) PREDICTED: RNA-binding ( 305) 303 41.4 0.002
XP_016878363 (OMIM: 606447) PREDICTED: RNA-binding ( 305) 303 41.4 0.002
NP_542161 (OMIM: 606447) RNA-binding protein with ( 305) 303 41.4 0.002
NP_001273554 (OMIM: 606447) RNA-binding protein wi ( 305) 303 41.4 0.002
NP_006702 (OMIM: 606447) RNA-binding protein with ( 305) 303 41.4 0.002
XP_005255106 (OMIM: 606447) PREDICTED: RNA-binding ( 305) 303 41.4 0.002
NP_001269688 (OMIM: 602718) transformer-2 protein ( 180) 298 40.6 0.002
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168) 291 39.9 0.0031
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168) 291 39.9 0.0031
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172) 291 39.9 0.0031
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172) 291 39.9 0.0031
XP_005264542 (OMIM: 600572) PREDICTED: serine/argi ( 223) 290 40.0 0.0039
XP_016867578 (OMIM: 602718) PREDICTED: transformer ( 181) 286 39.5 0.0044
NP_001269686 (OMIM: 602718) transformer-2 protein ( 181) 286 39.5 0.0044
XP_016867579 (OMIM: 602718) PREDICTED: transformer ( 181) 286 39.5 0.0044
XP_005249782 (OMIM: 602718) PREDICTED: transformer ( 181) 286 39.5 0.0044
NP_001269687 (OMIM: 602718) transformer-2 protein ( 181) 286 39.5 0.0044
NP_002130 (OMIM: 300199,300238) RNA-binding motif ( 391) 289 40.2 0.0057
NP_037425 (OMIM: 602718) transformer-2 protein hom ( 282) 286 39.7 0.0058
XP_011531334 (OMIM: 600572) PREDICTED: serine/argi ( 121) 277 38.4 0.0063
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494) 286 40.1 0.008
XP_016877083 (OMIM: 600914) PREDICTED: serine/argi ( 145) 274 38.2 0.0085
>>NP_001182356 (OMIM: 600813) serine/arginine-rich splic (221 aa)
initn: 1466 init1: 1466 opt: 1466 Z-score: 771.0 bits: 149.8 E(85289): 3.3e-36
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
130 140 150 160 170 180
190 200 210 220
pF1KB4 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
:::::::::::::::::::::::::::::::::::::::::
NP_001 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
190 200 210 220
>>XP_016880431 (OMIM: 600813) PREDICTED: serine/arginine (221 aa)
initn: 1466 init1: 1466 opt: 1466 Z-score: 771.0 bits: 149.8 E(85289): 3.3e-36
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
130 140 150 160 170 180
190 200 210 220
pF1KB4 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
:::::::::::::::::::::::::::::::::::::::::
XP_016 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
190 200 210 220
>>NP_003007 (OMIM: 600813) serine/arginine-rich splicing (221 aa)
initn: 1466 init1: 1466 opt: 1466 Z-score: 771.0 bits: 149.8 E(85289): 3.3e-36
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
130 140 150 160 170 180
190 200 210 220
pF1KB4 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
:::::::::::::::::::::::::::::::::::::::::
NP_003 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
190 200 210 220
>>XP_016872631 (OMIM: 603269) PREDICTED: serine/arginine (282 aa)
initn: 949 init1: 644 opt: 772 Z-score: 419.6 bits: 85.1 E(85289): 1.2e-16
Smith-Waterman score: 810; 60.6% identity (69.7% similar) in 254 aa overlap (1-213:1-253)
10 20 30 40 50 60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
:: :::::::.:: .:::::::::::::.::::::::::::::::::. .:: ::::::
XP_016 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
::::.:::.:: ::::: :::::::::.::::: : .::.: : : :::::::::
XP_016 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR-DLPRSRQGEPRGRSRGGGYGRRSR
70 80 90 100 110
130 140 150
pF1KB4 S-------PRRRRRSRSR----SRSRSRSRSR-SRYSRSK------SRSR------TRSR
: ::::.::::: :::::::: : :::::: :::: .:::
XP_016 SYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSR
120 130 140 150 160 170
160 170 180 190
pF1KB4 SRST------------SKSRSAR----RSKSKSSSVSRSRSRSRSRSRS-RSPPPVSKRE
: . :.:: .: ::.:::.: . ::: : :.: : : : .
XP_016 YRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSR
180 190 200 210 220 230
200 210 220
pF1KB4 SKSRSRSKSPPKSPEEEGAVSS
:.:::::.: .::
XP_016 SRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS
240 250 260 270 280
>>NP_115285 (OMIM: 603269) serine/arginine-rich splicing (282 aa)
initn: 949 init1: 644 opt: 772 Z-score: 419.6 bits: 85.1 E(85289): 1.2e-16
Smith-Waterman score: 810; 60.6% identity (69.7% similar) in 254 aa overlap (1-213:1-253)
10 20 30 40 50 60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
:: :::::::.:: .:::::::::::::.::::::::::::::::::. .:: ::::::
NP_115 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
::::.:::.:: ::::: :::::::::.::::: : .::.: : : :::::::::
NP_115 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR-DLPRSRQGEPRGRSRGGGYGRRSR
70 80 90 100 110
130 140 150
pF1KB4 S-------PRRRRRSRSR----SRSRSRSRSR-SRYSRSK------SRSR------TRSR
: ::::.::::: :::::::: : :::::: :::: .:::
NP_115 SYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSR
120 130 140 150 160 170
160 170 180 190
pF1KB4 SRST------------SKSRSAR----RSKSKSSSVSRSRSRSRSRSRS-RSPPPVSKRE
: . :.:: .: ::.:::.: . ::: : :.: : : : .
NP_115 YRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSR
180 190 200 210 220 230
200 210 220
pF1KB4 SKSRSRSKSPPKSPEEEGAVSS
:.:::::.: .::
NP_115 SRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS
240 250 260 270 280
>>NP_001177934 (OMIM: 605221) serine/arginine-rich splic (261 aa)
initn: 761 init1: 242 opt: 448 Z-score: 256.4 bits: 54.8 E(85289): 1.5e-07
Smith-Waterman score: 453; 41.1% identity (62.3% similar) in 236 aa overlap (3-212:4-234)
10 20 30 40 50
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
: ::: ::: : :.. : . ::: : .:: . :::.: : ::.. ::::.
NP_001 MSRYLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAY
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP-PDSHHSRRGP---PPRRYGGGGY
:.:.: ::::::. .: . ::....:.:. : :.. ....: ::
NP_001 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR
60 70 80 90 100 110
120 130 140 150 160
pF1KB4 GRRSRS-PRRRRRSRSRS------RS---RSRSRSRSRYSRSKSRS-RTRSRSRSTSKSR
::::: .:::::::: :: :.: .: : :::.: . : . :.:: :.:.
NP_001 YRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRFKHRNRSFSRSK
120 130 140 150 160 170
170 180 190 200 210
pF1KB4 SARRSKSKSSSVSRSRSRSRSRSRSRSPP-PVSKRESKSR----------SRSKSPPKSP
: ::.:::. .. ...::::: :.. .:: .::.. ::.: ::.:
NP_001 SNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSK
180 190 200 210 220 230
220
pF1KB4 EEEGAVSS
NP_001 SQSRSQSRSRSKSRSRSWTSPKSSGH
240 250 260
>>NP_473357 (OMIM: 605221) serine/arginine-rich splicing (262 aa)
initn: 1241 init1: 313 opt: 448 Z-score: 256.3 bits: 54.8 E(85289): 1.5e-07
Smith-Waterman score: 449; 41.2% identity (61.3% similar) in 238 aa overlap (3-212:4-235)
10 20 30 40 50
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
: ::: ::: : :.. : . ::: : .:: . :::.: : ::.. ::::.
NP_473 MSRYLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAY
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP-PDSHHSRRGP---PPRRYGGGGY
:.:.: ::::::. .: . ::....:.:. : :.. ....: ::
NP_473 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR
60 70 80 90 100 110
120 130 140 150
pF1KB4 GRRSRS-PRRRRRSRSRS------RSRS-----------RSRSRSRYSRSKSRSRTRSRS
::::: .:::::::: :: : ::::.: .: : :.:. :::
NP_473 YRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRS
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB4 RSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKS------RSRSKSPPK
.:.:.::: . :.. .. ::::: :....:. : :: . :: .::.: ::.
NP_473 KSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTD-SKTHYKSGSRYEKESRKKEPPR
180 190 200 210 220 230
220
pF1KB4 SPEEEGAVSS
:
NP_473 SKSQSRSQSRSRSKSRSRSWTSPKSSGH
240 250 260
>>NP_001182375 (OMIM: 600572) serine/arginine-rich splic (226 aa)
initn: 1246 init1: 243 opt: 437 Z-score: 251.5 bits: 53.7 E(85289): 2.9e-07
Smith-Waterman score: 445; 44.5% identity (61.2% similar) in 227 aa overlap (3-213:4-216)
10 20 30 40 50
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
::: : :.. : :: .. :.:.: :: . :.: :. ::::
NP_001 MSRYGR----YGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAF
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA-------RYGRPPDSHHSRR--GPPPRRY
:.:.: ::::::. ..:: :. : ..::... :. ::: .:: : : :
NP_001 VEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP----ARRPFDPNDRCY
60 70 80 90 100
120 130 140 150 160
pF1KB4 --G-GGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR-TRSRSRSTSKSRSA
: : :. . :::::::::::.::::.: :::::.:::: :::: : .:::
NP_001 ECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGRRSRSASPRRSRSI
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB4 RRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSR---SKSPPKSPEEEGAVSS
.:.:.:. :::: : . :: . : :. .:.: :: :.:: ::
NP_001 SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSPSGSPRRSASPERMD
170 180 190 200 210 220
>>NP_001026854 (OMIM: 600572) serine/arginine-rich splic (238 aa)
initn: 714 init1: 243 opt: 436 Z-score: 250.7 bits: 53.7 E(85289): 3.2e-07
Smith-Waterman score: 459; 44.1% identity (59.7% similar) in 238 aa overlap (3-218:4-227)
10 20 30 40 50
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
::: : :.. : :: .. :.:.: :: . :.: :. ::::
NP_001 MSRYGR----YGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAF
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA-------RYGRPPDSHHSRR--GPPPRRY
:.:.: ::::::. ..:: :. : ..::... :. ::: .:: : : :
NP_001 VEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP----ARRPFDPNDRCY
60 70 80 90 100
120 130 140 150 160
pF1KB4 --G-GGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR-TRSRSRSTSKSRSA
: : :. . :::::::::::.::::.: :::::.:::: :::: : .:::
NP_001 ECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGRRSRSASPRRSRSI
110 120 130 140 150 160
170 180 190 200 210
pF1KB4 RRSKSKSSSVSRSRS---------RSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG
.:.:.:. :::: .: ::::::: : :.:.::: :: .: :
NP_001 SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSG
170 180 190 200 210 220
220
pF1KB4 AVSS
.
NP_001 SPRRSASPERMD
230
>>NP_001287866 (OMIM: 605221) serine/arginine-rich splic (217 aa)
initn: 455 init1: 313 opt: 435 Z-score: 250.6 bits: 53.5 E(85289): 3.2e-07
Smith-Waterman score: 435; 43.6% identity (63.0% similar) in 211 aa overlap (3-207:4-198)
10 20 30 40 50
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
: ::: ::: : :.. : . ::: : .:: . :::.: : ::.. ::::.
NP_001 MSRYLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAY
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP-PDSHHSRRGP---PPRRYGGGGY
:.:.: ::::::. .: . ::....:.:. : :.. ....: ::
NP_001 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 GRRSRS-PRRRRRSRSRSRSRSRSRSRS-RYSRSKSRSRTRSRSRSTSKSRSARRSKSKS
::::: .:::::::: . . :: : : :: .: : ::::.: . : : ..
NP_001 YRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPR-RSRSHSDND-----RFKHRN
120 130 140 150 160
180 190 200 210 220
pF1KB4 SSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
: :::.: :::::.:. : :.: :..:::.
NP_001 RSFSRSKSNSRSRSKSQ---P--KKEMKAKSRSRPNCSWNTQYSSAYYTSRKI
170 180 190 200 210
221 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:42:13 2016 done: Thu Nov 3 15:42:14 2016
Total Scan time: 7.140 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]