Result of FASTA (ccds) for
pFN21AB4712
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4712, 247 aa
1>>>pF1KB4712 247 - 247 aa - 247 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7743+/-0.00102; mu= 12.2309+/- 0.061
mean_var=75.0864+/-14.858, 0's: 0 Z-trim(103.4): 33 B-trim: 53 in 1/49
Lambda= 0.148011
statistics sampled from 7381 (7396) to 7381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.227), width: 16
Scan time: 2.160
The best scores are: opt bits E(32554)
CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7 ( 247) 1582 347.3 5.7e-96
CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22 ( 246) 1387 305.6 2e-83
CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20 ( 246) 1164 258.0 4.2e-69
CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8 ( 245) 1153 255.7 2.1e-68
CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2 ( 245) 1091 242.4 2.1e-64
CCDS288.1 SFN gene_id:2810|Hs108|chr1 ( 248) 1031 229.6 1.5e-60
CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17 ( 255) 1003 223.6 9.7e-59
>>CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7 (247 aa)
initn: 1582 init1: 1582 opt: 1582 Z-score: 1836.4 bits: 347.3 E(32554): 5.7e-96
Smith-Waterman score: 1582; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
190 200 210 220 230 240
pF1KB4 DGGEGNN
:::::::
CCDS55 DGGEGNN
>>CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22 (246 aa)
initn: 1387 init1: 1387 opt: 1387 Z-score: 1611.4 bits: 305.6 E(32554): 2e-83
Smith-Waterman score: 1387; 87.0% identity (95.9% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
: :::::.:.::::::::::::::.::: :::::::::::.:::::::::::::::::::
CCDS13 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
:::::::::: :::::::.: :.:::::::::::.::.:::::::..:::::.. :::::
CCDS13 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
::::::::::::::::::.:::. .:::.:: ::.:: :::::.::::::::::::::.:
CCDS13 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
:::::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::.
CCDS13 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
190 200 210 220 230 240
pF1KB4 DGGEGNN
..::::
CCDS13 EAGEGN
>>CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20 (246 aa)
initn: 1021 init1: 669 opt: 1164 Z-score: 1354.1 bits: 258.0 E(32554): 4.2e-69
Smith-Waterman score: 1164; 75.4% identity (89.5% similar) in 248 aa overlap (2-247:3-246)
10 20 30 40 50
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSS
.:. .:::::.:::::::::::::::: ::: .. :::::::::::::::::::::::
CCDS13 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 WRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYES
::::::::::: . :::: .: . :::::: ::. .:.::: :::.::: : :: ::
CCDS13 WRVISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNA--TQPES
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 KVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNY
:::::::::::.:::.:::.:... :.: .:..::.:: ::::..::::::::::::::.
CCDS13 KVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 SVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD
::::::: :.::.:: :::::::.::::::::::.:::::::::::::::::::::..:
CCDS13 SVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQG
180 190 200 210 220 230
240
pF1KB4 DDG--GEGNN
:.: :::.:
CCDS13 DEGDAGEGEN
240
>>CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8 (245 aa)
initn: 998 init1: 653 opt: 1153 Z-score: 1341.4 bits: 255.7 E(32554): 2.1e-68
Smith-Waterman score: 1153; 74.8% identity (89.4% similar) in 246 aa overlap (2-245:1-242)
10 20 30 40 50 60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
.:...:::::.::::::::::::: ::.::: . ::::::::::::::::::::::::
CCDS62 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSW
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
::.::::::: .: ::: .:.: :::::: ::. .:.::::::...:: : : : :::
CCDS62 RVVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
::::::::::::::::::.:. . .:..:..::.:: ::::..::::::::::::::.:
CCDS62 VFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
:::::: :.::.:: :::::::.::::::::.:.:::::::::::::::::::::: : :
CCDS62 VFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD
180 190 200 210 220 230
pF1KB4 DG--GEGNN
.. :::
CCDS62 EAEAGEGGEN
240
>>CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2 (245 aa)
initn: 951 init1: 629 opt: 1091 Z-score: 1269.8 bits: 242.4 E(32554): 2.1e-64
Smith-Waterman score: 1091; 70.3% identity (87.0% similar) in 246 aa overlap (2-245:1-242)
10 20 30 40 50 60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
... .:.:::.::::::::::::. :: ::: . ::::::::::::::::::.:::.:
CCDS16 MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
:::::::::: : ..::..... ::::.:.::...: :: :::.::: : :. :::
CCDS16 RVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIAN--ATNPESK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
::::::::::.::::::: :. : ....:. ::.:: .:::..::::::::::::::.:
CCDS16 VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
:::::: : :: :: :::::::.:::::::::::::::::::::::::::::::::. .
CCDS16 VFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGE
180 190 200 210 220 230
pF1KB4 --DGGEGNN
:..::
CCDS16 ECDAAEGAEN
240
>>CCDS288.1 SFN gene_id:2810|Hs108|chr1 (248 aa)
initn: 597 init1: 597 opt: 1031 Z-score: 1200.5 bits: 229.6 E(32554): 1.5e-60
Smith-Waterman score: 1031; 65.4% identity (89.3% similar) in 243 aa overlap (2-244:1-241)
10 20 30 40 50 60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
..: .:.:::.::::::::.:::: ::...: .: :: :::::::::::::::..:..:
CCDS28 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAW
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
::.::::::.. .:.:.: :: ::::.: ::..::. ::.:::..:::. ... ::.
CCDS28 RVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDA--ESR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
::::::::::::::::::::. . ...:...::.:: .:::..: ::.:::::::::.:
CCDS28 VFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
::.::: :.::.: ::::.::.:.:.: ::.::::::::::::::::::::::.:. .
CCDS28 VFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGE
180 190 200 210 220 230
pF1KB4 DGGEGNN
.:::
CCDS28 EGGEAPQEPQS
240
>>CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17 (255 aa)
initn: 1024 init1: 584 opt: 1003 Z-score: 1168.0 bits: 223.6 E(32554): 9.7e-59
Smith-Waterman score: 1003; 64.2% identity (83.3% similar) in 246 aa overlap (1-246:1-243)
10 20 30 40 50 60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
: :::.:: .:.:::::::::.:. .::.:. .. :. :::::::::::::.::::.::
CCDS11 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
:.::::::: :.: :..:.: ::. .: ::. .: :.:..::..:: . :::
CCDS11 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTG--ESK
70 80 90 100 110
130 140 150 160 170 180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
::: ::::::.::::: :::. : ..:.: ::. : .:. .. ::::::::::::.:
CCDS11 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
:::::: :.:..::.:::.::::::::::::.:.::::::::::::::::::::::.: :
CCDS11 VFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD
180 190 200 210 220 230
pF1KB4 DGGEGNN
: : :
CCDS11 -GEEQNKEALQDVEDENQ
240 250
247 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:26:48 2016 done: Thu Nov 3 15:26:49 2016
Total Scan time: 2.160 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]