Result of FASTA (omim) for pFN21AB4031
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4031, 790 aa
  1>>>pF1KB4031 790 - 790 aa - 790 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4163+/-0.000378; mu= 15.4950+/- 0.024
 mean_var=93.2979+/-18.591, 0's: 0 Z-trim(115.5): 6  B-trim: 967 in 1/53
 Lambda= 0.132782
 statistics sampled from 25925 (25931) to 25925 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.304), width:  16
 Scan time: 11.590

The best scores are:                                      opt bits E(85289)
NP_002477 (OMIM: 600469) nuclear cap-binding prote ( 790) 5350 1035.5       0
XP_016870224 (OMIM: 600469) PREDICTED: nuclear cap ( 723) 4856 940.8       0
XP_016870225 (OMIM: 600469) PREDICTED: nuclear cap ( 600) 3638 707.5 4.3e-203
XP_016870226 (OMIM: 600469) PREDICTED: nuclear cap ( 600) 3638 707.5 4.3e-203
XP_011517017 (OMIM: 600469) PREDICTED: nuclear cap ( 458) 3147 613.4  7e-175
XP_016870227 (OMIM: 600469) PREDICTED: nuclear cap ( 420) 2828 552.2 1.6e-156


>>NP_002477 (OMIM: 600469) nuclear cap-binding protein s  (790 aa)
 initn: 5350 init1: 5350 opt: 5350  Z-score: 5537.7  bits: 1035.5 E(85289):    0
Smith-Waterman score: 5350; 99.9% identity (100.0% similar) in 790 aa overlap (1-790:1-790)

               10        20        30        40        50        60
pF1KB4 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEDDVPQVRRDWYVYAFLSSLPWV
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_002 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 EAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB4 LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
              730       740       750       760       770       780

              790
pF1KB4 VFQQFCALQA
       ::::::::::
NP_002 VFQQFCALQA
              790

>>XP_016870224 (OMIM: 600469) PREDICTED: nuclear cap-bin  (723 aa)
 initn: 4856 init1: 4856 opt: 4856  Z-score: 5026.9  bits: 940.8 E(85289):    0
Smith-Waterman score: 4856; 99.0% identity (99.6% similar) in 721 aa overlap (70-790:3-723)

      40        50        60        70        80        90         
pF1KB4 EKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYN
                                     ..  . ::::::::::::::::::::::::
XP_016                             MQKIYESSARLLPEKLTIYTTLVGLLNARNYN
                                           10        20        30  

     100       110       120       130       140       150         
pF1KB4 FGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQED
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 FGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEE
             40        50        60        70        80        90  

     160       170       180       190       200       210         
pF1KB4 DVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTA
            100       110       120       130       140       150  

     220       230       240       250       260       270         
pF1KB4 DKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTED
            160       170       180       190       200       210  

     280       290       300       310       320       330         
pF1KB4 SVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSY
            220       230       240       250       260       270  

     340       350       360       370       380       390         
pF1KB4 PGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLY
            280       290       300       310       320       330  

     400       410       420       430       440       450         
pF1KB4 MRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRL
            340       350       360       370       380       390  

     460       470       480       490       500       510         
pF1KB4 SYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFS
            400       410       420       430       440       450  

     520       530       540       550       560       570         
pF1KB4 ILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAES
            460       470       480       490       500       510  

     580       590       600       610       620       630         
pF1KB4 DEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWE
            520       530       540       550       560       570  

     640       650       660       670       680       690         
pF1KB4 ILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKV
            580       590       600       610       620       630  

     700       710       720       730       740       750         
pF1KB4 ESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQ
            640       650       660       670       680       690  

     760       770       780       790
pF1KB4 QYMVTLENLLFTAELDPHILAVFQQFCALQA
       :::::::::::::::::::::::::::::::
XP_016 QYMVTLENLLFTAELDPHILAVFQQFCALQA
            700       710       720   

>>XP_016870225 (OMIM: 600469) PREDICTED: nuclear cap-bin  (600 aa)
 initn: 3633 init1: 3633 opt: 3638  Z-score: 3767.2  bits: 707.5 E(85289): 4.3e-203
Smith-Waterman score: 3638; 93.8% identity (95.7% similar) in 577 aa overlap (214-790:30-600)

           190       200       210       220       230       240   
pF1KB4 LYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDR
                                     .: :::. :      :  .  . ..:    
XP_016  MYLRCDEIGMCMHFCHLCPGLERSCTKRKMQRWTASLPT-----LKAILKDAKRLMYPC
                10        20        30             40        50    

           250       260       270       280       290       300   
pF1KB4 WQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVM
       ..   .:  ..   ::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YR-YGLLINHIHKKSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVM
            60        70        80        90       100       110   

           310       320       330       340       350       360   
pF1KB4 PGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLP
           120       130       140       150       160       170   

           370       380       390       400       410       420   
pF1KB4 APPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSN
           180       190       200       210       220       230   

           430       440       450       460       470       480   
pF1KB4 FQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTC
           240       250       260       270       280       290   

           490       500       510       520       530       540   
pF1KB4 IYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK
           300       310       320       330       340       350   

           550       560       570       580       590       600   
pF1KB4 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV
           360       370       380       390       400       410   

           610       620       630       640       650       660   
pF1KB4 LVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAK
           420       430       440       450       460       470   

           670       680       690       700       710       720   
pF1KB4 EKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE
           480       490       500       510       520       530   

           730       740       750       760       770       780   
pF1KB4 HLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQ
           540       550       560       570       580       590   

           790
pF1KB4 QFCALQA
       :::::::
XP_016 QFCALQA
           600

>>XP_016870226 (OMIM: 600469) PREDICTED: nuclear cap-bin  (600 aa)
 initn: 3633 init1: 3633 opt: 3638  Z-score: 3767.2  bits: 707.5 E(85289): 4.3e-203
Smith-Waterman score: 3638; 93.8% identity (95.7% similar) in 577 aa overlap (214-790:30-600)

           190       200       210       220       230       240   
pF1KB4 LYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDR
                                     .: :::. :      :  .  . ..:    
XP_016  MYLRCDEIGMCMHFCHLCPGLERSCTKRKMQRWTASLPT-----LKAILKDAKRLMYPC
                10        20        30             40        50    

           250       260       270       280       290       300   
pF1KB4 WQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVM
       ..   .:  ..   ::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YR-YGLLINHIHKKSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVM
            60        70        80        90       100       110   

           310       320       330       340       350       360   
pF1KB4 PGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLP
           120       130       140       150       160       170   

           370       380       390       400       410       420   
pF1KB4 APPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSN
           180       190       200       210       220       230   

           430       440       450       460       470       480   
pF1KB4 FQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTC
           240       250       260       270       280       290   

           490       500       510       520       530       540   
pF1KB4 IYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK
           300       310       320       330       340       350   

           550       560       570       580       590       600   
pF1KB4 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV
           360       370       380       390       400       410   

           610       620       630       640       650       660   
pF1KB4 LVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAK
           420       430       440       450       460       470   

           670       680       690       700       710       720   
pF1KB4 EKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE
           480       490       500       510       520       530   

           730       740       750       760       770       780   
pF1KB4 HLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQ
           540       550       560       570       580       590   

           790
pF1KB4 QFCALQA
       :::::::
XP_016 QFCALQA
           600

>>XP_011517017 (OMIM: 600469) PREDICTED: nuclear cap-bin  (458 aa)
 initn: 3147 init1: 3147 opt: 3147  Z-score: 3260.6  bits: 613.4 E(85289): 7e-175
Smith-Waterman score: 3147; 99.8% identity (100.0% similar) in 457 aa overlap (1-457:1-457)

               10        20        30        40        50        60
pF1KB4 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEDDVPQVRRDWYVYAFLSSLPWV
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
XP_011 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
       :::::::::::::::::::::::::::::::::::::                       
XP_011 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMS                      
              430       440       450                              

              490       500       510       520       530       540
pF1KB4 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN

>>XP_016870227 (OMIM: 600469) PREDICTED: nuclear cap-bin  (420 aa)
 initn: 2828 init1: 2828 opt: 2828  Z-score: 2930.9  bits: 552.2 E(85289): 1.6e-156
Smith-Waterman score: 2828; 100.0% identity (100.0% similar) in 420 aa overlap (371-790:1-420)

              350       360       370       380       390       400
pF1KB4 GKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYM
                                     ::::::::::::::::::::::::::::::
XP_016                               MYTTLLIELCKLQPGSLPQVLAQATEMLYM
                                             10        20        30

              410       420       430       440       450       460
pF1KB4 RLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLS
               40        50        60        70        80        90

              470       480       490       500       510       520
pF1KB4 YHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSI
              100       110       120       130       140       150

              530       540       550       560       570       580
pF1KB4 LKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESD
              160       170       180       190       200       210

              590       600       610       620       630       640
pF1KB4 EGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEI
              220       230       240       250       260       270

              650       660       670       680       690       700
pF1KB4 LHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVE
              280       290       300       310       320       330

              710       720       730       740       750       760
pF1KB4 SAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQ
              340       350       360       370       380       390

              770       780       790
pF1KB4 YMVTLENLLFTAELDPHILAVFQQFCALQA
       ::::::::::::::::::::::::::::::
XP_016 YMVTLENLLFTAELDPHILAVFQQFCALQA
              400       410       420




790 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:16:22 2016 done: Thu Nov  3 14:16:23 2016
 Total Scan time: 11.590 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com