Result of FASTA (omim) for
pFN21AB3481
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3481, 782 aa
1>>>pF1KB3481 782 - 782 aa - 782 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9461+/-0.000401; mu= 18.3292+/- 0.025
mean_var=93.3259+/-18.307, 0's: 0 Z-trim(113.5): 24 B-trim: 0 in 0/49
Lambda= 0.132762
statistics sampled from 22873 (22889) to 22873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.268), width: 16
Scan time: 10.990
The best scores are: opt bits E(85289)
NP_000113 (OMIM: 133510,610651,616390) TFIIH basal ( 782) 5187 1004.3 0
XP_011509096 (OMIM: 133510,610651,616390) PREDICTE ( 788) 5165 1000.1 0
NP_001290345 (OMIM: 133510,610651,616390) TFIIH ba ( 718) 4752 921.0 0
NP_001290347 (OMIM: 133510,610651,616390) TFIIH ba ( 718) 4752 921.0 0
XP_016859072 (OMIM: 133510,610651,616390) PREDICTE ( 630) 4161 807.8 0
XP_011509097 (OMIM: 133510,610651,616390) PREDICTE ( 636) 4139 803.6 0
>>NP_000113 (OMIM: 133510,610651,616390) TFIIH basal tra (782 aa)
initn: 5187 init1: 5187 opt: 5187 Z-score: 5369.5 bits: 1004.3 E(85289): 0
Smith-Waterman score: 5187; 100.0% identity (100.0% similar) in 782 aa overlap (1-782:1-782)
10 20 30 40 50 60
pF1KB3 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF
730 740 750 760 770 780
pF1KB3 RK
::
NP_000 RK
>>XP_011509096 (OMIM: 133510,610651,616390) PREDICTED: T (788 aa)
initn: 3723 init1: 3723 opt: 5165 Z-score: 5346.7 bits: 1000.1 E(85289): 0
Smith-Waterman score: 5165; 99.2% identity (99.2% similar) in 788 aa overlap (1-782:1-788)
10 20 30 40 50 60
pF1KB3 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
130 140 150 160 170 180
190 200 210 220 230
pF1KB3 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSA------ISKTAESSGGPSTSR
::::::::::::::::::::::::::::::::::::::: :::::::::::::::
XP_011 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAHLPLSQISKTAESSGGPSTSR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 VTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 YDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB3 CTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB3 HTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVRED
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB3 DKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLY
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB3 TMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQ
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB3 NFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEE
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB3 YNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQ
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB3 KVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVH
730 740 750 760 770 780
780
pF1KB3 PLFKRFRK
::::::::
XP_011 PLFKRFRK
>>NP_001290345 (OMIM: 133510,610651,616390) TFIIH basal (718 aa)
initn: 4752 init1: 4752 opt: 4752 Z-score: 4919.8 bits: 921.0 E(85289): 0
Smith-Waterman score: 4752; 100.0% identity (100.0% similar) in 718 aa overlap (65-782:1-718)
40 50 60 70 80 90
pF1KB3 QEAVPSAAGKQVDESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYK
::::::::::::::::::::::::::::::
NP_001 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYK
10 20 30
100 110 120 130 140 150
pF1KB3 YAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB3 FIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETF
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB3 TSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQ
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB3 EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB3 SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB3 DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRV
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB3 LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPM
400 410 420 430 440 450
520 530 540 550 560 570
pF1KB3 SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
460 470 480 490 500 510
580 590 600 610 620 630
pF1KB3 LNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
520 530 540 550 560 570
640 650 660 670 680 690
pF1KB3 QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
580 590 600 610 620 630
700 710 720 730 740 750
pF1KB3 GMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGAD
640 650 660 670 680 690
760 770 780
pF1KB3 DTVYMEYHSSRSKAPSKHVHPLFKRFRK
::::::::::::::::::::::::::::
NP_001 DTVYMEYHSSRSKAPSKHVHPLFKRFRK
700 710
>>NP_001290347 (OMIM: 133510,610651,616390) TFIIH basal (718 aa)
initn: 4752 init1: 4752 opt: 4752 Z-score: 4919.8 bits: 921.0 E(85289): 0
Smith-Waterman score: 4752; 100.0% identity (100.0% similar) in 718 aa overlap (65-782:1-718)
40 50 60 70 80 90
pF1KB3 QEAVPSAAGKQVDESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYK
::::::::::::::::::::::::::::::
NP_001 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYK
10 20 30
100 110 120 130 140 150
pF1KB3 YAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB3 FIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETF
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB3 TSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQ
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB3 EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB3 SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB3 DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRV
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB3 LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPM
400 410 420 430 440 450
520 530 540 550 560 570
pF1KB3 SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
460 470 480 490 500 510
580 590 600 610 620 630
pF1KB3 LNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
520 530 540 550 560 570
640 650 660 670 680 690
pF1KB3 QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
580 590 600 610 620 630
700 710 720 730 740 750
pF1KB3 GMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGAD
640 650 660 670 680 690
760 770 780
pF1KB3 DTVYMEYHSSRSKAPSKHVHPLFKRFRK
::::::::::::::::::::::::::::
NP_001 DTVYMEYHSSRSKAPSKHVHPLFKRFRK
700 710
>>XP_016859072 (OMIM: 133510,610651,616390) PREDICTED: T (630 aa)
initn: 4161 init1: 4161 opt: 4161 Z-score: 4308.8 bits: 807.8 E(85289): 0
Smith-Waterman score: 4161; 100.0% identity (100.0% similar) in 630 aa overlap (153-782:1-630)
130 140 150 160 170 180
pF1KB3 LYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHP
::::::::::::::::::::::::::::::
XP_016 MQFIKLCTVSYGKVKLVLKHNRYFVESCHP
10 20 30
190 200 210 220 230 240
pF1KB3 DVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKS
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB3 DIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSV
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB3 NPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCL
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB3 VLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWE
220 230 240 250 260 270
430 440 450 460 470 480
pF1KB3 AERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNF
280 290 300 310 320 330
490 500 510 520 530 540
pF1KB3 LIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFR
340 350 360 370 380 390
550 560 570 580 590 600
pF1KB3 ACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKI
400 410 420 430 440 450
610 620 630 640 650 660
pF1KB3 NTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSL
460 470 480 490 500 510
670 680 690 700 710 720
pF1KB3 VSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAATDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAATDL
520 530 540 550 560 570
730 740 750 760 770 780
pF1KB3 DAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFRK
580 590 600 610 620 630
>>XP_011509097 (OMIM: 133510,610651,616390) PREDICTED: T (636 aa)
initn: 3723 init1: 3723 opt: 4139 Z-score: 4286.0 bits: 803.6 E(85289): 0
Smith-Waterman score: 4139; 99.1% identity (99.1% similar) in 636 aa overlap (153-782:1-636)
130 140 150 160 170 180
pF1KB3 LYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHP
::::::::::::::::::::::::::::::
XP_011 MQFIKLCTVSYGKVKLVLKHNRYFVESCHP
10 20 30
190 200 210 220 230
pF1KB3 DVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSA------ISKTAESSGGPSTSRVT
::::::::::::::::::::::::::::::::::::: :::::::::::::::::
XP_011 DVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAHLPLSQISKTAESSGGPSTSRVT
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB3 DPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYD
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB3 FRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACT
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB3 VRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHT
220 230 240 250 260 270
420 430 440 450 460 470
pF1KB3 TKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDK
280 290 300 310 320 330
480 490 500 510 520 530
pF1KB3 IVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTM
340 350 360 370 380 390
540 550 560 570 580 590
pF1KB3 NPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNF
400 410 420 430 440 450
600 610 620 630 640 650
pF1KB3 KHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYN
460 470 480 490 500 510
660 670 680 690 700 710
pF1KB3 AFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKV
520 530 540 550 560 570
720 730 740 750 760 770
pF1KB3 LAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPL
580 590 600 610 620 630
780
pF1KB3 FKRFRK
::::::
XP_011 FKRFRK
782 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:23:31 2016 done: Thu Nov 3 13:23:32 2016
Total Scan time: 10.990 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]