Result of FASTA (ccds) for
pFN21AA0197
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0197, 1315 aa
1>>>pF1KA0197 1315 - 1315 aa - 1315 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7817+/-0.00124; mu= 19.6104+/- 0.074
mean_var=65.5453+/-12.832, 0's: 0 Z-trim(100.5): 27 B-trim: 0 in 0/48
Lambda= 0.158418
statistics sampled from 6147 (6152) to 6147 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.534), E-opt: 0.2 (0.189), width: 16
Scan time: 5.220
The best scores are: opt bits E(32554)
CCDS31484.1 NUP160 gene_id:23279|Hs108|chr11 (1436) 8637 1984.0 0
CCDS81567.1 NUP160 gene_id:23279|Hs108|chr11 ( 224) 900 215.5 1.3e-55
>>CCDS31484.1 NUP160 gene_id:23279|Hs108|chr11 (1436 aa)
initn: 8715 init1: 8630 opt: 8637 Z-score: 10655.1 bits: 1984.0 E(32554): 0
Smith-Waterman score: 8637; 99.0% identity (99.2% similar) in 1310 aa overlap (2-1311:37-1341)
10 20 30
pF1KA0 MAAGALERSFVELSGAERERPRHFREFTVCS
::::::::::::::::::::::::::::::
CCDS31 APPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KA0 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KA0 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
130 140 150 160 170 180
160 170 180 190 200 210
pF1KA0 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
190 200 210 220 230 240
220 230 240 250 260 270
pF1KA0 DIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDH
250 260 270 280 290 300
280 290 300 310 320 330
pF1KA0 KLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAPKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAPKRG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KA0 QFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVKYINFEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVKYINFEH
370 380 390 400 410 420
400 410 420 430 440 450
pF1KA0 NVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFCRGTERN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFCRGTERN
430 440 450 460 470 480
460 470 480 490 500 510
pF1KA0 LDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQEALSHPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQEALSHPL
490 500 510 520 530 540
520 530 540 550 560 570
pF1KA0 ALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICL
550 560 570 580 590 600
580 590 600 610 620 630
pF1KA0 IKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIR
610 620 630 640 650 660
640 650 660 670 680 690
pF1KA0 NPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIAST
670 680 690 700 710 720
700 710 720 730 740 750
pF1KA0 RFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATD
730 740 750 760 770 780
760 770 780 790 800 810
pF1KA0 VPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAP
790 800 810 820 830 840
820 830 840 850 860 870
pF1KA0 LSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNV
850 860 870 880 890 900
880 890 900 910 920 930
pF1KA0 GSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKV
910 920 930 940 950 960
940 950 960 970 980 990
pF1KA0 LRLLDVIGLPELVIQLATSAITEASDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPD
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS31 LRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPD
970 980 990 1000 1010 1020
1000 1010 1020 1030 1040 1050
pF1KA0 SSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYA
1030 1040 1050 1060 1070 1080
1060 1070 1080 1090 1100 1110
pF1KA0 FHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPV
1090 1100 1110 1120 1130 1140
1120 1130 1140 1150 1160 1170
pF1KA0 SGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAV
1150 1160 1170 1180 1190 1200
1180 1190 1200 1210 1220 1230
pF1KA0 AGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWA
1210 1220 1230 1240 1250 1260
1240 1250 1260 1270 1280 1290
pF1KA0 WLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 WLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLI
1270 1280 1290 1300 1310 1320
1300 1310
pF1KA0 NSHNIALSQKVDKATRDLLYRRTL
::. .::: : ::
CCDS31 NSY-----KKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPM
1330 1340 1350 1360 1370 1380
>>CCDS81567.1 NUP160 gene_id:23279|Hs108|chr11 (224 aa)
initn: 900 init1: 900 opt: 900 Z-score: 1111.8 bits: 215.5 E(32554): 1.3e-55
Smith-Waterman score: 900; 100.0% identity (100.0% similar) in 139 aa overlap (2-140:37-175)
10 20 30
pF1KA0 MAAGALERSFVELSGAERERPRHFREFTVCS
::::::::::::::::::::::::::::::
CCDS81 APPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KA0 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KA0 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSVSWLSAISFIS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KA0 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
CCDS81 QITLGVTNVVLERCLLELKEIWILVIPHQAYFDSYRLK
190 200 210 220
1315 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:12:50 2016 done: Thu Nov 3 09:12:51 2016
Total Scan time: 5.220 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]