Result of FASTA (ccds) for pFN21AA0066
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0066, 981 aa
  1>>>pF1KA0066 981 - 981 aa - 981 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8801+/-0.000839; mu= 18.8476+/- 0.051
 mean_var=79.8269+/-15.559, 0's: 0 Z-trim(107.2): 14  B-trim: 0 in 0/52
 Lambda= 0.143549
 statistics sampled from 9445 (9448) to 9445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.29), width:  16
 Scan time:  3.640

The best scores are:                                      opt bits E(32554)
CCDS33294.1 RAB3GAP1 gene_id:22930|Hs108|chr2      ( 981) 6624 1382.0       0
CCDS54402.1 RAB3GAP1 gene_id:22930|Hs108|chr2      ( 988) 6600 1377.0       0


>>CCDS33294.1 RAB3GAP1 gene_id:22930|Hs108|chr2           (981 aa)
 initn: 6624 init1: 6624 opt: 6624  Z-score: 7407.1  bits: 1382.0 E(32554):    0
Smith-Waterman score: 6624; 100.0% identity (100.0% similar) in 981 aa overlap (1-981:1-981)

               10        20        30        40        50        60
pF1KA0 MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 AQRAAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSKALPQRMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AQRAAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSKALPQRMY
              910       920       930       940       950       960

              970       980 
pF1KA0 SVLTKEDFRLAGAFSSDTSFF
       :::::::::::::::::::::
CCDS33 SVLTKEDFRLAGAFSSDTSFF
              970       980 

>>CCDS54402.1 RAB3GAP1 gene_id:22930|Hs108|chr2           (988 aa)
 initn: 6104 init1: 6104 opt: 6600  Z-score: 7380.2  bits: 1377.0 E(32554):    0
Smith-Waterman score: 6600; 99.3% identity (99.3% similar) in 988 aa overlap (1-981:1-988)

               10        20        30        40        50        60
pF1KA0 MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CQGPGVRTDFEMVHLRKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYVLQDWQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELHLATTWPHLTEGIIVDNDVYS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAFEEEGKETADI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 THALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WQEFVLEMRFRWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VTNIYPGDAGKAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDEKGNVV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVN
              850       860       870       880       890       900

                     910       920       930       940       950   
pF1KA0 AQR-------AAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSK
       :::       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AQRLTESSDEAAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSK
              910       920       930       940       950       960

           960       970       980 
pF1KA0 ALPQRMYSVLTKEDFRLAGAFSSDTSFF
       ::::::::::::::::::::::::::::
CCDS54 ALPQRMYSVLTKEDFRLAGAFSSDTSFF
              970       980        




981 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:06:56 2016 done: Thu Nov  3 09:06:56 2016
 Total Scan time:  3.640 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com