hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20080305/iprscan-20080305-22071160/chunk_1/iprscan-20080305-22071160.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KSDA0780 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00558 220.6 1.4e-61 1 SM00333 88.8 6.3e-22 2 SM00249 62.6 4.9e-14 2 SM00545 61.5 1.1e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00545 1/1 15 57 .. 1 45 [] 61.5 1.1e-13 SM00558 1/1 144 310 .. 1 214 [] 220.6 1.4e-61 SM00249 1/2 689 747 .. 1 39 [] 31.8 9.2e-05 SM00249 2/2 809 865 .. 1 39 [] 30.8 0.00019 SM00333 1/2 877 934 .. 1 60 [] 47.9 1.4e-09 SM00333 2/2 935 991 .. 1 60 [] 41.0 1.6e-07 Alignments of top-scoring domains: SM00545: domain 1 of 1, from 15 to 57: score 61.5, E = 1.1e-13 *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<- i++f+P++eEF+ + +Y ++ +++g A+++G +Kv+PPk+WkP pF1KSDA078 15 KIMTFRPSMEEFREFNKYLAYMESKG--AHRAGLAKVIPPKEWKP 57 * pF1KSDA078 - - SM00558: domain 1 of 1, from 144 to 310: score 220.6, E = 1.4e-61 *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv +++ ++wn+a+l ++l+ +++e + i g+++ pF1KSDA078 144 DEGVDEWNIARLN--------------TVLDVVEEE-CGISIEGVNT 175 gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli pyly+Gm+ ++t+ wH++d+dlyS+Nylh+g++ K Wy+i pF1KSDA078 176 ------PYLYFGMW---KTTFAWHTEDMDLYSINYLHFGEP---KSWYAI 213 Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr Ppe+ +le+l++ + +p++++ ++ +l+h++t+isp vlkk pF1KSDA078 214 PPEHGKRLERLAQGF--------FPSSSQGCDAFLRHKMTLISPSVLKKY 255 lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF + +p +++Q++Gef++++p+ yHa+fn+G fn+a++ NF pF1KSDA078 256 G-----------IPFDKITQEAGEFMITFPYGYHAGFNHG-FNCAESTNF 293 aspewlpmglrlveelr<-* a+ +w+++g+ + + + pF1KSDA078 294 ATVRWIDYGKVAKLCTC 310 SM00249: domain 1 of 2, from 689 to 747: score 31.8, E = 9.2e-05 *->yC.vCgk.................g.llqCdkgCdrwyHv.Clgppl +C + +++ + ++++ ++++++ l++C +C++ +H +C+g+p pF1KSDA078 689 MCfIYSEenieysppnafleedgtSlLISCA-KCCVRVHAsCYGIPS 734 eepdg.wyCprCk<-* +e ++w+C rCk pF1KSDA078 735 HEICDgWLCARCK 747 SM00249: domain 2 of 2, from 809 to 865: score 30.8, E = 0.00019 *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep C +C+ + ++ +g ++qC+ ++C+ ++Hv+C++ ++ ++++ + pF1KSDA078 809 KCiFCRHrvkrvsGaCIQCSyGRCPASFHVtCAHAAGVlmepddwPY 855 dg.wyCprCk<-* + C r+k pF1KSDA078 856 VVnITCFRHK 865 SM00333: domain 1 of 2, from 877 to 934: score 47.9, E = 1.4e-09 *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv + + vG+ v+++++ + ++Y +r+ +v+s+ ++yeV+f+D +++ + pF1KSDA078 877 KVISVGQTVITKHR-NTRYYSCRVMAVTSQ-TFYEVMFDDGSFSRDT 921 plsdlrqlpekfa<-* ++d+ + ++ ++ pF1KSDA078 922 FPEDIVSRDCLKL 934 SM00333: domain 2 of 2, from 935 to 991: score 41.0, E = 1.6e-07 *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv +++++G++v+++w+ Dg Y A+ + + +y+V f+D G+++ pF1KSDA078 935 GPPAEGEVVQVKWP-DGKLYGAKYFGSNIA-HMYQVEFED-GSQIAM 978 plsdlrqlpekfa<-* +++d+++l+e+++ pF1KSDA078 979 KREDIYTLDEELP 991 //