hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080305/iprscan-20080305-22071160/chunk_1/iprscan-20080305-22071160.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KSDA0780 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02373.13.fs JmjC domain 228.1 5.9e-67 1 PF02373.13.ls JmjC domain 230.1 4.6e-66 1 PF02375.7.ls jmjN domain 82.3 1.4e-21 1 PF02375.7.fs jmjN domain 80.5 3.5e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02375.7.fs 1/1 17 62 .. 1 53 [] 80.5 3.5e-21 PF02375.7.ls 1/1 17 62 .. 1 53 [] 82.3 1.4e-21 PF02373.13.fs 1/1 177 293 .. 1 126 [] 228.1 5.9e-67 PF02373.13.ls 1/1 177 293 .. 1 126 [] 230.1 4.6e-66 PF00628.19.fs 1/2 714 749 .. 15 51 .] 19.9 5.3e-06 Alignments of top-scoring domains: PF02375.7.fs: domain 1 of 1, from 17 to 62: score 80.5, E = 3.5e-21 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk ++F+P+meEF+ +++Y+a+ ++ gA+++G++KV+PPkeW k pF1KSDA078 17 MTFRPSMEEFREFNKYLAYM-ESKGAHRAGLAKVIPPKEW------K 56 Ppcald<-* P++ +d pF1KSDA078 57 PRQCYD 62 PF02375.7.ls: domain 1 of 1, from 17 to 62: score 82.3, E = 1.4e-21 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk ++F+P+meEF+ +++Y+a+ ++ gA+++G++KV+PPkeW k pF1KSDA078 17 MTFRPSMEEFREFNKYLAYM-ESKGAHRAGLAKVIPPKEW------K 56 Ppcald<-* P++ +d pF1KSDA078 57 PRQCYD 62 PF02373.13.fs: domain 1 of 1, from 177 to 293: score 228.1, E = 5.9e-67 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek +lY+Gm+++t++wH+Ed++lySinylhfg+pk WY+iP+e+++++e pF1KSDA078 177 YLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE- 222 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ ++++ + +P++ ++++ ++ lrh++tlisP+v L++ gip+ +++Q pF1KSDA078 223 --RLAQGF--FPSS-SQGCDAF-LRHKMTLISPSV--LKKYGIPFDKITQ 264 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++GEf+itfP++yHa+fN+Gfn+ae++NF pF1KSDA078 265 EAGEFMITFPYGYHAGFNHGFNCAESTNF 293 PF02373.13.ls: domain 1 of 1, from 177 to 293: score 230.1, E = 4.6e-66 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek +lY+Gm+++t++wH+Ed++lySinylhfg+pk WY+iP+e+++++e pF1KSDA078 177 YLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE- 222 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ ++++ + +P++ ++++ ++ lrh++tlisP+v L++ gip+ +++Q pF1KSDA078 223 --RLAQGF--FPSS-SQGCDAF-LRHKMTLISPSV--LKKYGIPFDKITQ 264 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++GEf+itfP++yHa+fN+Gfn+ae++NF pF1KSDA078 265 EAGEFMITFPYGYHAGFNHGFNCAESTNF 293 PF00628.19.fs: domain 1 of 2, from 714 to 749: score 19.9, E = 5.3e-06 *->dllqCDgCdrwfHlaClgpplepeeipe.WyCpeCkpk<-* +l+ C +C++ +H++C+g+p ei ++W+C +Ck+ pF1KSDA078 714 LLISCAKCCVRVHASCYGIPSH--EICDgWLCARCKRN 749 //