Result of FASTA (omim) for pFN21AA1464
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1464, 620 aa
  1>>>pF1KA1464 620 - 620 aa - 620 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4433+/-0.000354; mu= -4.6970+/- 0.022
 mean_var=231.0128+/-46.734, 0's: 0 Z-trim(121.7): 37  B-trim: 100 in 1/58
 Lambda= 0.084383
 statistics sampled from 38697 (38743) to 38697 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.454), width:  16
 Scan time: 13.030

The best scores are:                                      opt bits E(85289)
NP_065901 (OMIM: 614031) ran-binding protein 10 is ( 620) 4229 527.8 4.4e-149
XP_005256127 (OMIM: 614031) PREDICTED: ran-binding ( 650) 3099 390.2 1.2e-107
XP_016878996 (OMIM: 614031) PREDICTED: ran-binding ( 436) 2824 356.7   1e-97
NP_005484 (OMIM: 603854) ran-binding protein 9 [Ho ( 729) 2815 355.6 3.4e-97
NP_001307169 (OMIM: 614031) ran-binding protein 10 ( 391) 2604 329.9   1e-89
XP_016878998 (OMIM: 614031) PREDICTED: ran-binding ( 391) 2604 329.9   1e-89
NP_001307167 (OMIM: 614031) ran-binding protein 10 ( 533) 2282 290.7 8.7e-78
XP_016865638 (OMIM: 603854) PREDICTED: ran-binding ( 507) 2265 288.6 3.5e-77
XP_006715008 (OMIM: 603854) PREDICTED: ran-binding ( 500) 2247 286.4 1.6e-76
XP_005256129 (OMIM: 614031) PREDICTED: ran-binding ( 518) 2176 277.8 6.5e-74
XP_011512507 (OMIM: 603854) PREDICTED: ran-binding ( 639) 2058 263.5 1.7e-69
NP_001307168 (OMIM: 614031) ran-binding protein 10 ( 594) 1748 225.7 3.6e-58
XP_016878997 (OMIM: 614031) PREDICTED: ran-binding ( 421) 1474 192.3 2.9e-48
XP_011521549 (OMIM: 614031) PREDICTED: ran-binding ( 421) 1474 192.3 2.9e-48
XP_011521547 (OMIM: 614031) PREDICTED: ran-binding ( 391) 1258 166.0 2.2e-40
XP_006721301 (OMIM: 614031) PREDICTED: ran-binding ( 494) 1260 166.3 2.3e-40


>>NP_065901 (OMIM: 614031) ran-binding protein 10 isofor  (620 aa)
 initn: 4229 init1: 4229 opt: 4229  Z-score: 2797.5  bits: 527.8 E(85289): 4.4e-149
Smith-Waterman score: 4229; 100.0% identity (100.0% similar) in 620 aa overlap (1-620:1-620)

               10        20        30        40        50        60
pF1KA1 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 HEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 HEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 DAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 DAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLR
              550       560       570       580       590       600

              610       620
pF1KA1 LMARAGLGSCSFARVDDYLH
       ::::::::::::::::::::
NP_065 LMARAGLGSCSFARVDDYLH
              610       620

>>XP_005256127 (OMIM: 614031) PREDICTED: ran-binding pro  (650 aa)
 initn: 3171 init1: 3097 opt: 3099  Z-score: 2053.7  bits: 390.2 E(85289): 1.2e-107
Smith-Waterman score: 4159; 95.4% identity (95.4% similar) in 650 aa overlap (1-620:1-650)

               10        20        30        40        50        60
pF1KA1 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
              370       380       390       400       410       420

              430       440       450                              
pF1KA1 SSPSSVNYSESNSTDSTKSQHHSSTSNQETS-----------------------------
       :::::::::::::::::::::::::::::::                             
XP_005 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSNPWLQLERRPNQAAPTTPPGPTPTSTPPH
              430       440       450       460       470       480

              460       470       480       490       500       510
pF1KA1 -DSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQLCGGNQAATER
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQLCGGNQAATER
              490       500       510       520       530       540

              520       530       540       550       560       570
pF1KA1 IILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCA
              550       560       570       580       590       600

              580       590       600       610       620
pF1KA1 ALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH
              610       620       630       640       650

>>XP_016878996 (OMIM: 614031) PREDICTED: ran-binding pro  (436 aa)
 initn: 2824 init1: 2824 opt: 2824  Z-score: 1875.5  bits: 356.7 E(85289): 1e-97
Smith-Waterman score: 2824; 100.0% identity (100.0% similar) in 423 aa overlap (198-620:14-436)

       170       180       190       200       210       220       
pF1KA1 VIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIE
                                     ::::::::::::::::::::::::::::::
XP_016                  MAPASTPRMATALANLYPTVGLQTPGEIVDANFGQQPFLFDIE
                                10        20        30        40   

       230       240       250       260       270       280       
pF1KA1 DYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQE
            50        60        70        80        90       100   

       290       300       310       320       330       340       
pF1KA1 EQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSE
           110       120       130       140       150       160   

       350       360       370       380       390       400       
pF1KA1 VRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPA
           170       180       190       200       210       220   

       410       420       430       440       450       460       
pF1KA1 PSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVL
           230       240       250       260       270       280   

       470       480       490       500       510       520       
pF1KA1 GSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGR
           290       300       310       320       330       340   

       530       540       550       560       570       580       
pF1KA1 EYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPP
           350       360       370       380       390       400   

       590       600       610       620
pF1KA1 LMLALGQASECLRLMARAGLGSCSFARVDDYLH
       :::::::::::::::::::::::::::::::::
XP_016 LMLALGQASECLRLMARAGLGSCSFARVDDYLH
           410       420       430      

>>NP_005484 (OMIM: 603854) ran-binding protein 9 [Homo s  (729 aa)
 initn: 2826 init1: 2002 opt: 2815  Z-score: 1866.0  bits: 355.6 E(85289): 3.4e-97
Smith-Waterman score: 2835; 66.3% identity (81.2% similar) in 658 aa overlap (3-620:93-729)

                                           10         20        30 
pF1KA1                             MAAATADPGAGNPQP-GDSSGGGAGGGLPSPG
                                     :..: :..: : : : ..: : .:: :.:.
NP_005 AAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPA
             70        80        90       100       110       120  

                                   40        50        60        70
pF1KA1 ---------------------EQELSRRLQRLYPAVNQQETPLPRSWSPKDKYNYIGLSQ
                            :.::.:::.::::::..::::::::::::::..::::::
NP_005 LVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQ
            130       140       150       160       170       180  

               80        90       100       110       120       130
pF1KA1 GNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMN
       .:::::::::::. ::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMN
            190       200       210       220       230       240  

              140       150       160       170       180       190
pF1KA1 RLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLG
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
NP_005 RLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLG
            250       260       270       280       290       300  

              200       210       220       230       240       250
pF1KA1 IAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARL
       ::::::: :::::::::::::.:::::::.::.:::::::::::.:.:. .  :::. : 
NP_005 IAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDRE
            310       320       330       340       350       360  

              260       270       280       290       300       310
pF1KA1 GEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEA
       ::::...:.::::::::::::::: :::: :.  . :: :::::::.:::::: ::.:::
NP_005 GEWQTMIQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEA
            370       380       390       400       410       420  

              320       330       340       350       360          
pF1KA1 IETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYP------G
       :::::..::.:::.:::::: :: :::.::::::::::: :..::::::::::      .
NP_005 IETTQQLYPSLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFS
            430       440       450       460       470       480  

          370       380                390       400       410     
pF1KA1 SPSLSPRHGPSSSHMHN--TGADSP-------SCSNGVASTKSKQNHSKYPAPSSSSSSS
       :::.:: ::    ..::  .:  :        :::::: :.:..:.. .           
NP_005 SPSMSPSHG---MNIHNLASGKGSTAHFSGFESCSNGVISNKAHQSYCH-----------
            490          500       510       520                   

         420       430       440       450       460       470     
pF1KA1 SSSSSSSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIV
         :.. . :..:  : :: . ..::.     :. ::. ...::..:: :::  . :. ..
NP_005 --SNKHQSSNLNVPELNSINMSRSQQ----VNNFTSN-DVDMETDHYSNGVGETSSNGFL
        530       540       550            560       570       580 

         480          490       500       510       520       530  
pF1KA1 NGAYKHEDLQTD---ESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKN
       ::. ::.  . :   :  .:. . :::::::.::: ::.: :::::::.:::: :. :::
NP_005 NGSSKHDHEMEDCDTEMEVDSSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRDCGKN
             590       600       610       620       630       640 

            540       550       560       570       580       590  
pF1KA1 LAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLAL
        :. .::.::::::::::::. :::.:::::::::::.::::::::..:::::::: ::.
NP_005 TANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAM
             650       660       670       680       690       700 

            600       610       620
pF1KA1 GQASECLRLMARAGLGSCSFARVDDYLH
       :::..:: ::::.:.:::.:: :.::::
NP_005 GQATQCLGLMARSGIGSCAFATVEDYLH
             710       720         

>>NP_001307169 (OMIM: 614031) ran-binding protein 10 iso  (391 aa)
 initn: 2604 init1: 2604 opt: 2604  Z-score: 1731.5  bits: 329.9 E(85289): 1e-89
Smith-Waterman score: 2604; 100.0% identity (100.0% similar) in 391 aa overlap (230-620:1-391)

     200       210       220       230       240       250         
pF1KA1 LYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQN
                                     ::::::::::::::::::::::::::::::
NP_001                               MREWRAKVQGTVHCFPISARLGEWQAVLQN
                                             10        20        30

     260       270       280       290       300       310         
pF1KA1 MVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYP
               40        50        60        70        80        90

     320       330       340       350       360       370         
pF1KA1 GLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHM
              100       110       120       130       140       150

     380       390       400       410       420       430         
pF1KA1 HNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKS
              160       170       180       190       200       210

     440       450       460       470       480       490         
pF1KA1 QHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQ
              220       230       240       250       260       270

     500       510       520       530       540       550         
pF1KA1 LCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQ
              280       290       300       310       320       330

     560       570       580       590       600       610         
pF1KA1 LDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYL
              340       350       360       370       380       390

     620
pF1KA1 H
       :
NP_001 H
        

>>XP_016878998 (OMIM: 614031) PREDICTED: ran-binding pro  (391 aa)
 initn: 2604 init1: 2604 opt: 2604  Z-score: 1731.5  bits: 329.9 E(85289): 1e-89
Smith-Waterman score: 2604; 100.0% identity (100.0% similar) in 391 aa overlap (230-620:1-391)

     200       210       220       230       240       250         
pF1KA1 LYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQN
                                     ::::::::::::::::::::::::::::::
XP_016                               MREWRAKVQGTVHCFPISARLGEWQAVLQN
                                             10        20        30

     260       270       280       290       300       310         
pF1KA1 MVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYP
               40        50        60        70        80        90

     320       330       340       350       360       370         
pF1KA1 GLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHM
              100       110       120       130       140       150

     380       390       400       410       420       430         
pF1KA1 HNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKS
              160       170       180       190       200       210

     440       450       460       470       480       490         
pF1KA1 QHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQ
              220       230       240       250       260       270

     500       510       520       530       540       550         
pF1KA1 LCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQ
              280       290       300       310       320       330

     560       570       580       590       600       610         
pF1KA1 LDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYL
              340       350       360       370       380       390

     620
pF1KA1 H
       :
XP_016 H
        

>>NP_001307167 (OMIM: 614031) ran-binding protein 10 iso  (533 aa)
 initn: 2354 init1: 2280 opt: 2282  Z-score: 1517.5  bits: 290.7 E(85289): 8.7e-78
Smith-Waterman score: 3342; 94.4% identity (94.4% similar) in 533 aa overlap (118-620:1-533)

        90       100       110       120       130       140       
pF1KA1 ASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDG
                                     ::::::::::::::::::::::::::::::
NP_001                               MGIGLSAQGVNMNRLPGWDKHSYGYHGDDG
                                             10        20        30

       150       160       170       180       190       200       
pF1KA1 HSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQ
               40        50        60        70        80        90

       210       220       230       240       250       260       
pF1KA1 TPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVH
              100       110       120       130       140       150

       270       280       290       300       310       320       
pF1KA1 HGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPN
              160       170       180       190       200       210

       330       340       350       360       370       380       
pF1KA1 LLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSP
              220       230       240       250       260       270

       390       400       410       420       430       440       
pF1KA1 SCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQHHSSTSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQHHSSTSN
              280       290       300       310       320       330

       450                                     460       470       
pF1KA1 QETS------------------------------DSEMEMEAEHYPNGVLGSMSTRIVNG
       ::::                              ::::::::::::::::::::::::::
NP_001 QETSNPWLQLERRPNQAAPTTPPGPTPTSTPPHSDSEMEMEAEHYPNGVLGSMSTRIVNG
              340       350       360       370       380       390

       480       490       500       510       520       530       
pF1KA1 AYKHEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYKHEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTE
              400       410       420       430       440       450

       540       550       560       570       580       590       
pF1KA1 MLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASE
              460       470       480       490       500       510

       600       610       620
pF1KA1 CLRLMARAGLGSCSFARVDDYLH
       :::::::::::::::::::::::
NP_001 CLRLMARAGLGSCSFARVDDYLH
              520       530   

>>XP_016865638 (OMIM: 603854) PREDICTED: ran-binding pro  (507 aa)
 initn: 2267 init1: 1487 opt: 2265  Z-score: 1506.7  bits: 288.6 E(85289): 3.5e-77
Smith-Waterman score: 2284; 66.5% identity (81.9% similar) in 525 aa overlap (114-620:4-507)

            90       100       110       120       130       140   
pF1KA1 HKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYH
                                     . ::::::::::::::::::::::::::::
XP_016                            MDHKKGYMGIGLSAQGVNMNRLPGWDKHSYGYH
                                          10        20        30   

           150       160       170       180       190       200   
pF1KA1 GDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPT
       ::::::::::::::::::::::::::::::::::.::::::::::::::::::: :::::
XP_016 GDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPT
            40        50        60        70        80        90   

           210       220       230       240       250       260   
pF1KA1 VGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSS
       ::::::::.:::::::.::.:::::::::::.:.:. .  :::. : ::::...:.::::
XP_016 VGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSS
           100       110       120       130       140       150   

           270       280       290       300       310       320   
pF1KA1 YLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLE
       ::::::::::: :::: :.  . :: :::::::.:::::: ::.::::::::..::.:::
XP_016 YLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLE
           160       170       180       190       200       210   

           330       340       350       360             370       
pF1KA1 HNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYP------GSPSLSPRHGPSSS
       .:::::: :: :::.::::::::::: :..::::::::::      .:::.:: ::    
XP_016 RNPNLLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFSSPSMSPSHG---M
           220       230       240       250       260          270

       380                390       400       410       420        
pF1KA1 HMHN--TGADSP-------SCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNY
       ..::  .:  :        :::::: :.:..:.. .             :.. . :..: 
XP_016 NIHNLASGKGSTAHFSGFESCSNGVISNKAHQSYCH-------------SNKHQSSNLNV
              280       290       300                    310       

      430       440       450       460       470       480        
pF1KA1 SESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTD-
        : :: . ..::.     :. ::. ...::..:: :::  . :. ..::. ::.  . : 
XP_016 PELNSINMSRSQQ----VNNFTSN-DVDMETDHYSNGVGETSSNGFLNGSSKHDHEMEDC
       320       330            340       350       360       370  

         490       500       510       520       530       540     
pF1KA1 --ESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSL
         :  .:. . :::::::.::: ::.: :::::::.:::: :. ::: :. .::.:::::
XP_016 DTEMEVDSSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRDCGKNTANKKMLKDAFSL
            380       390       400       410       420       430  

         550       560       570       580       590       600     
pF1KA1 LAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARA
       :::::::. :::.:::::::::::.::::::::..:::::::: ::.:::..:: ::::.
XP_016 LAYSDPWNSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAMGQATQCLGLMARS
            440       450       460       470       480       490  

         610       620
pF1KA1 GLGSCSFARVDDYLH
       :.:::.:: :.::::
XP_016 GIGSCAFATVEDYLH
            500       

>>XP_006715008 (OMIM: 603854) PREDICTED: ran-binding pro  (500 aa)
 initn: 2249 init1: 1469 opt: 2247  Z-score: 1494.9  bits: 286.4 E(85289): 1.6e-76
Smith-Waterman score: 2266; 66.7% identity (81.9% similar) in 519 aa overlap (118-620:1-500)

        90       100       110       120       130       140       
pF1KA1 ASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDG
                                     ::::::::::::::::::::::::::::::
XP_006                               MGIGLSAQGVNMNRLPGWDKHSYGYHGDDG
                                             10        20        30

       150       160       170       180       190       200       
pF1KA1 HSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQ
       ::::::::::::::::::::::::::::::.::::::::::::::::::: :::::::::
XP_006 HSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQ
               40        50        60        70        80        90

       210       220       230       240       250       260       
pF1KA1 TPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVH
       ::::.:::::::.::.:::::::::::.:.:. .  :::. : ::::...:.::::::::
XP_006 TPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLVH
              100       110       120       130       140       150

       270       280       290       300       310       320       
pF1KA1 HGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPN
       ::::::: :::: :.  . :: :::::::.:::::: ::.::::::::..::.:::.:::
XP_006 HGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLERNPN
              160       170       180       190       200       210

       330       340       350       360             370       380 
pF1KA1 LLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYP------GSPSLSPRHGPSSSHMHN
       ::: :: :::.::::::::::: :..::::::::::      .:::.:: ::  . :   
XP_006 LLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFSSPSMSPSHG-MNIHNLA
              220       230       240       250       260          

                    390       400       410       420       430    
pF1KA1 TGADSP-------SCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNST
       .:  :        :::::: :.:..:.. .             :.. . :..:  : :: 
XP_006 SGKGSTAHFSGFESCSNGVISNKAHQSYCH-------------SNKHQSSNLNVPELNSI
     270       280       290                    300       310      

          440       450       460       470       480          490 
pF1KA1 DSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTD---ESSM
       . ..::.     :. ::. ...::..:: :::  . :. ..::. ::.  . :   :  .
XP_006 NMSRSQQ----VNNFTSN-DVDMETDHYSNGVGETSSNGFLNGSSKHDHEMEDCDTEMEV
        320           330        340       350       360       370 

             500       510       520       530       540       550 
pF1KA1 DDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDP
       :. . :::::::.::: ::.: :::::::.:::: :. ::: :. .::.:::::::::::
XP_006 DSSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRDCGKNTANKKMLKDAFSLLAYSDP
             380       390       400       410       420       430 

             560       570       580       590       600       610 
pF1KA1 WSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCS
       :. :::.:::::::::::.::::::::..:::::::: ::.:::..:: ::::.:.:::.
XP_006 WNSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAMGQATQCLGLMARSGIGSCA
             440       450       460       470       480       490 

             620
pF1KA1 FARVDDYLH
       :: :.::::
XP_006 FATVEDYLH
             500

>>XP_005256129 (OMIM: 614031) PREDICTED: ran-binding pro  (518 aa)
 initn: 2248 init1: 2174 opt: 2176  Z-score: 1448.0  bits: 277.8 E(85289): 6.5e-74
Smith-Waterman score: 3236; 94.2% identity (94.2% similar) in 517 aa overlap (134-620:2-518)

           110       120       130       140       150       160   
pF1KA1 YFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTF
                                     ::::::::::::::::::::::::::::::
XP_005                              MGWDKHSYGYHGDDGHSFCSSGTGQPYGPTF
                                            10        20        30 

           170       180       190       200       210       220   
pF1KA1 TTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFL
              40        50        60        70        80        90 

           230       240       250       260       270       280   
pF1KA1 FDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTET
             100       110       120       130       140       150 

           290       300       310       320       330       340   
pF1KA1 PIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNG
             160       170       180       190       200       210 

           350       360       370       380       390       400   
pF1KA1 TDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHS
             220       230       240       250       260       270 

           410       420       430       440       450             
pF1KA1 KYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQHHSSTSNQETS------------
       ::::::::::::::::::::::::::::::::::::::::::::::::            
XP_005 KYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQHHSSTSNQETSNPWLQLERRPNQ
             280       290       300       310       320       330 

                               460       470       480       490   
pF1KA1 ------------------DSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDD
                         ::::::::::::::::::::::::::::::::::::::::::
XP_005 AAPTTPPGPTPTSTPPHSDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDD
             340       350       360       370       380       390 

           500       510       520       530       540       550   
pF1KA1 RHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWS
             400       410       420       430       440       450 

           560       570       580       590       600       610   
pF1KA1 CPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFA
             460       470       480       490       500       510 

           620
pF1KA1 RVDDYLH
       :::::::
XP_005 RVDDYLH
              




620 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:13:15 2016 done: Wed Nov  2 21:13:16 2016
 Total Scan time: 13.030 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com