Result of FASTA (omim) for
pFN21AA1254
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1254, 757 aa
1>>>pF1KA1254 757 - 757 aa - 757 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6618+/-0.000541; mu= -5.1212+/- 0.033
mean_var=367.4664+/-74.278, 0's: 0 Z-trim(116.9): 21 B-trim: 26 in 1/55
Lambda= 0.066906
statistics sampled from 28460 (28480) to 28460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.334), width: 16
Scan time: 9.370
The best scores are: opt bits E(85289)
NP_004739 (OMIM: 611326) cell cycle progression pr ( 757) 4961 494.1 9.1e-139
NP_065790 (OMIM: 611326) cell cycle progression pr ( 757) 4961 494.1 9.1e-139
NP_001191379 (OMIM: 611326) cell cycle progression ( 807) 4869 485.2 4.5e-136
NP_001191380 (OMIM: 611326) cell cycle progression ( 424) 1996 207.6 8.5e-53
>>NP_004739 (OMIM: 611326) cell cycle progression protei (757 aa)
initn: 4961 init1: 4961 opt: 4961 Z-score: 2612.3 bits: 494.1 E(85289): 9.1e-139
Smith-Waterman score: 4961; 99.9% identity (100.0% similar) in 757 aa overlap (1-757:1-757)
10 20 30 40 50 60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_004 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
670 680 690 700 710 720
730 740 750
pF1KA1 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
:::::::::::::::::::::::::::::::::::::
NP_004 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
730 740 750
>>NP_065790 (OMIM: 611326) cell cycle progression protei (757 aa)
initn: 4961 init1: 4961 opt: 4961 Z-score: 2612.3 bits: 494.1 E(85289): 9.1e-139
Smith-Waterman score: 4961; 99.9% identity (100.0% similar) in 757 aa overlap (1-757:1-757)
10 20 30 40 50 60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_065 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
670 680 690 700 710 720
730 740 750
pF1KA1 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
:::::::::::::::::::::::::::::::::::::
NP_065 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
730 740 750
>>NP_001191379 (OMIM: 611326) cell cycle progression pro (807 aa)
initn: 4869 init1: 4869 opt: 4869 Z-score: 2564.0 bits: 485.2 E(85289): 4.5e-136
Smith-Waterman score: 4869; 99.9% identity (100.0% similar) in 744 aa overlap (1-744:1-744)
10 20 30 40 50 60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
670 680 690 700 710 720
730 740 750
pF1KA1 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
::::::::::::::::::::::::
NP_001 VFEKLDEYIYRHFFGHTFSPPYGPSRPDKKQRMVNIENSRHRKQEQKHLQPQPYKREGKW
730 740 750 760 770 780
>>NP_001191380 (OMIM: 611326) cell cycle progression pro (424 aa)
initn: 1996 init1: 1996 opt: 1996 Z-score: 1068.8 bits: 207.6 E(85289): 8.5e-53
Smith-Waterman score: 1996; 99.7% identity (100.0% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
:::::::::::
NP_001 TNLATENQYLRKLFTDFVNDVKDYLRNMKEYEVDNDGVFEKLDEYIYRHFFGHTFSPPYG
310 320 330 340 350 360
>--
initn: 355 init1: 355 opt: 355 Z-score: 212.8 bits: 49.2 E(85289): 4.1e-05
Smith-Waterman score: 355; 100.0% identity (100.0% similar) in 50 aa overlap (695-744:312-361)
670 680 690 700 710 720
pF1KA1 LKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDGVFEK
::::::::::::::::::::::::::::::
NP_001 LARCWTLTEAEKMSFETQKTNLATENQYLRKLFTDFVNDVKDYLRNMKEYEVDNDGVFEK
290 300 310 320 330 340
730 740 750
pF1KA1 LDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
::::::::::::::::::::
NP_001 LDEYIYRHFFGHTFSPPYGPSRPDKKQRMVNIENSRHRKQEQKHLQPQPYKREGKWHKYG
350 360 370 380 390 400
757 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:51:19 2016 done: Wed Nov 2 20:51:21 2016
Total Scan time: 9.370 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]