Result of FASTA (ccds) for
pFN21AA1179
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1179, 1749 aa
1>>>pF1KA1179 1749 - 1749 aa - 1749 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5227+/-0.00127; mu= 18.1085+/- 0.077
mean_var=76.8004+/-15.526, 0's: 0 Z-trim(100.0): 46 B-trim: 13 in 1/49
Lambda= 0.146350
statistics sampled from 5912 (5934) to 5912 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.509), E-opt: 0.2 (0.182), width: 16
Scan time: 3.720
The best scores are: opt bits E(32554)
CCDS1755.1 IFT172 gene_id:26160|Hs108|chr2 (1749) 11586 2457.0 0
>>CCDS1755.1 IFT172 gene_id:26160|Hs108|chr2 (1749 aa)
initn: 11586 init1: 11586 opt: 11586 Z-score: 13207.7 bits: 2457.0 E(32554): 0
Smith-Waterman score: 11586; 100.0% identity (100.0% similar) in 1749 aa overlap (1-1749:1-1749)
10 20 30 40 50 60
pF1KA1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 KYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PAEYIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PAEYIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 FDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 REFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 REFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 LCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 KILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 EYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 TVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 TVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 QNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 TAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 TAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 HETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 HETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 WDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 WDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 KAARLVLTREELLANTELVEHITAALIKGELYERAGDLFEKIHNPQKALECYRKGNAFMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KAARLVLTREELLANTELVEHITAALIKGELYERAGDLFEKIHNPQKALECYRKGNAFMK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 AVELARLAFPVEVVKLEEAWGDHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AVELARLAFPVEVVKLEEAWGDHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 YILDLQDRNTASKYYPLVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 YILDLQDRNTASKYYPLVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 AMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVQEPDLAITMYKKHKLYDDMIRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVQEPDLAITMYKKHKLYDDMIRLV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 GKHHPDLLSDTHLHLGKELEAEGRLQEAEYHYLEAQEWKATVNMYRASGLWEEAYRVART
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GKHHPDLLSDTHLHLGKELEAEGRLQEAEYHYLEAQEWKATVNMYRASGLWEEAYRVART
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 QGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEAAVDHAADNCSFEFAFELSRLALKHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEAAVDHAADNCSFEFAFELSRLALKHK
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 TPEVHLKYAMFLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 TPEVHLKYAMFLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVA
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA1 EVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPSQLEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPSQLEAL
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA1 QEEYEREATKKGARGVEGFVEQARHWEQAGEYSRAVDCYLKVRDSGNSGLAEKCWMKAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QEEYEREATKKGARGVEGFVEQARHWEQAGEYSRAVDCYLKVRDSGNSGLAEKCWMKAAE
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA1 LSIKFLPPQRNMEVVLAVGPQLIGIGKHSAAAELYLNLDLVKEAIDAFIEGEEWNKAKRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LSIKFLPPQRNMEVVLAVGPQLIGIGKHSAAAELYLNLDLVKEAIDAFIEGEEWNKAKRV
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA1 AKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVIAALDLYVEQGQWDKCIETATKQNYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVIAALDLYVEQGQWDKCIETATKQNYK
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA1 ILHKYVALYATHLIREGSSAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNCAEAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 ILHKYVALYATHLIREGSSAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNCAEAY
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA1 HSWADLRDVLFNLCENLVKSSEANSPAHEEFKTMLLIAHYYATRSAAQSVKQLETVAARL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 HSWADLRDVLFNLCENLVKSSEANSPAHEEFKTMLLIAHYYATRSAAQSVKQLETVAARL
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA1 SVSLLRHTQLLPVDKAFYEAGIAAKAVGWDNMAFIFLNRFLDLTDAIEEGTLDGLDHSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SVSLLRHTQLLPVDKAFYEAGIAAKAVGWDNMAFIFLNRFLDLTDAIEEGTLDGLDHSDF
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA1 QDTDIPFEVPLPAKQHVPEAEREEVRDWVLTVSMDQRLEQVLPRDERGAYEASLVAASTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QDTDIPFEVPLPAKQHVPEAEREEVRDWVLTVSMDQRLEQVLPRDERGAYEASLVAASTG
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA1 VRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGG
1690 1700 1710 1720 1730 1740
pF1KA1 LPSTSFSFQ
:::::::::
CCDS17 LPSTSFSFQ
1749 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:42:01 2016 done: Wed Nov 2 20:42:02 2016
Total Scan time: 3.720 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]