hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20080305/iprscan-20080305-05334022/chunk_1/iprscan-20080305-05334022.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KA0473 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00271 31.1 0.00016 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00271 1/1 848 909 .. 1 72 [] 31.1 0.00016 Alignments of top-scoring domains: SM00271: domain 1 of 1, from 848 to 909: score 31.1, E = 0.00016 *->tdyYeiLGvskdAsddeIKKAYRkLAlkyHPDKnpgdpelseeklpe ++ ++ G +++++KK YRk +l +HPDK +g p pF1KA0473 848 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY-------- 886 eekeeAeekFkeIneAYevLsDpek<-* ++ A+ F+e+n A++ ++ + pF1KA0473 887 --EQYAKMIFMELNDAWSEFENQGQ 909 //