FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0103, 297 aa
  1>>>pF1KA0103 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8139+/-0.00109; mu= 13.3571+/- 0.065
 mean_var=78.2568+/-15.717, 0's: 0 Z-trim(103.2): 49  B-trim: 17 in 1/48
 Lambda= 0.144982
 statistics sampled from 7261 (7283) to 7261 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.224), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS6309.1 EMC2 gene_id:9694|Hs108|chr8            ( 297) 1947 416.9 8.8e-117


>>CCDS6309.1 EMC2 gene_id:9694|Hs108|chr8                 (297 aa)
 initn: 1947 init1: 1947 opt: 1947  Z-score: 2210.1  bits: 416.9 E(32554): 8.8e-117
Smith-Waterman score: 1947; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KA0 MAKVSELYDVTWEEMRDKMRKWREENSRNSEQIVEVGEELINEYASKLGDDIWIIYEQVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAKVSELYDVTWEEMRDKMRKWREENSRNSEQIVEVGEELINEYASKLGDDIWIIYEQVM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 IAALDYGRDDLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IAALDYGRDDLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 TAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 LMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIA
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KA0 SNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQITQS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQITQS
              250       260       270       280       290       




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:05:13 2016 done: Wed Nov  2 18:05:14 2016
 Total Scan time:  2.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]