hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080304/iprscan-20080304-16090084/chunk_1/iprscan-20080304-16090084.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KA0001 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 125.3 8.1e-42 1 PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 127.9 2.7e-35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00001.12.ls 1/1 39 295 .. 1 272 [] 127.9 2.7e-35 PF00001.12.fs 1/1 45 295 .. 7 272 .] 125.3 8.1e-42 Alignments of top-scoring domains: PF00001.12.ls: domain 1 of 1, from 39 to 295: score 127.9, E = 2.7e-35 *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg N++ +++++ + + ++ i++ N +AD+ ++lt p+ +l + pF1KA0001 39 LNGVSGWIFFYVPSSK-SFIIYLKNIVIADFVMSLTFPFKILGDSGL 84 gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr g W++ ++C+++ l++vnmy+Si + +IS+DRY Iv+Pl+++ ++ pF1KA0001 85 G-PWQLNVFVCRVSAVLFYVNMYVSIVFFGLISFDRYYKIVKPLWTSFIQ 133 tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp + + k+++++vW l lll++P ++++++ e + + C + pF1KA0001 134 S-VSYSKLLSVIVWMLMLLLAVPNIILTNQSVREVT-----QIKCIELKS 177 evstasvktwlvsyal...lstlvgFvlPllvilvcYtrIlrtlrkrark e + ++ ++++++ F + +l+++v+Yt I ++++k+ k pF1KA0001 178 ELG--------RKWHKasnYIFVAIFWIVFLLLIVFYTAITKKIFKSHLK 219 gaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsss + + s ++k + ++ +v+vF++C++Py+i+ + t ++ + +s pF1KA0001 220 SS-RNSTSVKKKSSRNIFSIVFVFFVCFVPYHIARIPYTKSqTEAH--YS 266 CelervlptallvtlwLayvNsclNPiIY<-* C+++++l++++ +tl+L+ +N cl+PiIY pF1KA0001 267 CQSKEILRYMKEFTLLLSAANVCLDPIIY 295 PF00001.12.fs: domain 1 of 1, from 45 to 295: score 125.3, E = 8.1e-42 *->lvilrtkklrtptnifilNLAvADLLflltlppwalyylvggedWpf +++++ + + ++ i++ N +AD+ ++lt p+ +l + g W++ pF1KA0001 45 WIFFYVPSSK-SFIIYLKNIVIADFVMSLTFPFKILGDSGLG-PWQL 89 GsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrrtsprrA ++C+++ l++vnmy+Si + +IS+DRY Iv+Pl+++ +++ + pF1KA0001 90 NVFVCRVSAVLFYVNMYVSIVFFGLISFDRYYKIVKPLWTSFIQS-VSYS 138 kvvillvWvlalllslPpllfswvktveegngvvnvttClidfpevstas k+++++vW l lll++P ++++++ e + + C + e pF1KA0001 139 KLLSVIVWMLMLLLAVPNIILTNQSVREVT-----QIKCIELKSELG--- 180 vktwlvsyal...lstlvgFvlPllvilvcYtrIlrtlrkrarkgaskkr + ++ ++++++ F + +l+++v+Yt I ++++k+ k + + pF1KA0001 181 -----RKWHKasnYIFVAIFWIVFLLLIVFYTAITKKIFKSHLKSS-RNS 224 sskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCelerv s ++k + ++ +v+vF++C++Py+i+ + t ++ + +sC+++++ pF1KA0001 225 TSVKKKSSRNIFSIVFVFFVCFVPYHIARIPYTKSqTEAH--YSCQSKEI 272 lptallvtlwLayvNsclNPiIY<-* l++++ +tl+L+ +N cl+PiIY pF1KA0001 273 LRYMKEFTLLLSAANVCLDPIIY 295 //