hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20090425/iprscan-20090425-23052539/chunk_1/iprscan-20090425-23052539.nocrc
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Query sequence: pF1KE0652
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 387.5   7.7e-112   1
SM00219                                                  35.7    2.4e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      23   279 ..     1   280 []    35.7  2.4e-13
SM00220    1/1      23   279 ..     1   231 []   387.5 7.7e-112

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 23 to 279: score 35.7, E = 2.4e-13
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda....keeFlrE
                       +++++LG GaF eV++++ k ++   AVK++ + a ++++  + +E
   pF1KE0652    23    FEFKETLGTGAFSEVVLAEEKatgKLFAVKCIPKKAlkgkESSIENE 69   

                   akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL
                   + +++k+  kH+NiV+L  +  ++         l++vm +++gG L d++
   pF1KE0652    70 IAVLRKI--KHENIVALEDIYESP-------NHLYLVMQLVSGGELFDRI 110  

                   rknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk...
                      ++  + +d      Q+ +   YL+++++vHRDL   N L+ ++ +++
   pF1KE0652   111 -VEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDees 159  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                    + IsDFGLs+  + +       d+ +++   g+ +       APE+l  
   pF1KE0652   160 KIMISDFGLSKMEGKG-------DVMSTAC--GTPG-----YVAPEVLAQ 195  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   + ++ + D WS GV  + i+  G +P ++      +++ ++e++ k ++ 
   pF1KE0652   196 KPYSKAVDCWSIGVIAY-ILLCGYPPFYD-----ENDSKLFEQILKAEYE 239  

                   pkPendlpiSs....vtCPdelYdlMlqCWaedPedRPtFsel..verl<
                      ++      ++ +  + d + +lM++    dP++R t ++  ++  + 
   pF1KE0652   240 FDSPY-----WddisDSAKDFIRNLMEK----DPNKRYTCEQAarHPWI  279  

                   -*
                     
   pF1KE0652     -    -    

SM00220: domain 1 of 1, from 23 to 279: score 387.5, E = 7.7e-112
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik........erilrE
                      +e+ ++lG GaF++V la +k tg+l+A+K+i+++  ++++ +i++E
   pF1KE0652    23    FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPkkalkgkeSSIENE 69   

                   ikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrg
                   i++L+k +H+NIV L d++e++++lylVm +++G  G+Lfd+++++g   
   pF1KE0652    70 IAVLRKiKHENIVALEDIYESpNHLYLVMQLVSG--GELFDRIVEKGF-- 115  

                   lrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds.....hv
                       ++E++a  ++rQ+l+a+ YLH++gI+HRDLKPeN+L  s+++++ +
   pF1KE0652   116 ----YTEkDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSqdeesKI 161  

                   KlaDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGci
                   +++DFGl++  ++++  +t +GTp Y+APEvl +++Y+k avD WS+G+i
   pF1KE0652   162 MISDFGLSKMEgkgdvmSTACGTPGYVAPEVLaqkPYSK-AVDCWSIGVI 210  

                   lyElltGkpPFp..qldlifkkig..............SpeakdLikklL
                    y+ll+G+pPF+++++ ++f++i++ +++ +++++++ S++akd+i++l+
   pF1KE0652   211 AYILLCGYPPFYdeNDSKLFEQILkaeyefdspywddiSDSAKDFIRNLM 260  

                   vkdPekRlta.eaLedeldikaHPff<-*
                   +kdP+kR+t+++a +       HP++   
   pF1KE0652   261 EKDPNKRYTCeQAAR-------HPWI    279  

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