hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20090109/iprscan-20090109-17131275/chunk_1/iprscan-20090109-17131275.nocrc
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Query sequence: pF1KB5402
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00195                                                 202.5    3.9e-56   1
SM00450                                                  50.8    1.8e-10   1
SM00404                                                  28.2    0.00026   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00450    1/1       9   138 ..     1    94 []    50.8  1.8e-10
SM00195    1/1     178   316 ..     1   172 []   202.5  3.9e-56
SM00404    1/1     219   316 ..     1    92 []    28.2  0.00026

Alignments of top-scoring domains:
SM00450: domain 1 of 1, from 9 to 138: score 50.8, E = 1.8e-10
                   *->v.leelkllln.edvvllDvRspeEyeggHIpGAvniplselldr..
                      ++l + +++++ +++v+lD+R+   ++++ + G++n++l+ ++ r+ 
   pF1KB5402     9    RqLRKMLRKEAaARCVVLDCRPYLAFAASNVRGSLNVNLNSVVLRra 55   

                   ......................lgldkdkpvivyCrsGvrs.......aa
                   +++  + +   +++  + +  ++g +    v+v++++++ +++ ++++aa
   pF1KB5402    56 rggavsaryvlpdeaararllqEGGGGVAAVVVLDQGSRHWqklreesAA 105  

                   kaawlLrelGfk...nVylLdGGykeWsaagpp<-*
                   +++++ +++  + +++Vy+L+GGy+ +++++p+   
   pF1KB5402   106 RVVLTPLLACLPagpRVYFLKGGYETFYSEYPE    138  

SM00195: domain 1 of 1, from 178 to 316: score 202.5, E = 3.9e-56
                   *->gpseilphlYLGsysdaseanlallkklgIthviNvteevpnnfelk
                      gp+eilp lYLGs+++as  + ++l++l It+ +Nv+++   ++e +
   pF1KB5402   178    GPVEILPFLYLGSAYHAS--KCEFLANLHITALLNVSRR---TSEAC 219  

                   kkndryytneyiskgsgftylqiPnvdDIyyhiawntetkiskyleeave
                                 + + +y++iP v+D       +++++is ++ ea++
   pF1KB5402   220 --------------MTHLHYKWIP-VED-------SHTADISSHFQEAID 247  

                   fIedaekkggkVLVHCqAGvSRSAtlviAYLMktrnlslrdAydfvyvYh
                   fI+ ++ kggkVLVHC AG+SRS+t+++AYLMkt+++ l +A+d++    
   pF1KB5402   248 FIDCVREKGGKVLVHCEAGISRSPTICMAYLMKTKQFRLKEAFDYI---- 293  

                   ikerRcpiisPNfgFlrQLieyerk<-*
                    k+rR +++sPNfgF++QL++ye     
   pF1KB5402   294 -KQRR-SMVSPNFGFMGQLLQYESE    316  

SM00404: domain 1 of 1, from 219 to 316: score 28.2, E = 0.00026
                   *->tvkhyhytgWpDhvekdsgvPe.....dsileflravrk...PivVH
                       ++h+hy   p     ds++ + +++ +  ++f++ vr++++ ++VH
   pF1KB5402   219    CMTHLHYKWIPVE---DSHTADisshfQEAIDFIDCVREkggKVLVH 262  

                   CSAGvGRTGtfvaidillqq.vdifdtvkelRsqRpgmvqteeQYlFlyr
                   C AG++R+ t+++++++  +++  ++   ++++ R +   ++     l +
   pF1KB5402   263 CEAGISRSPTICMAYLMKTKqFRLKEAFDYIKQRRSMVSPNFGFMGQLLQ 312  

                   alle<-*
                      e   
   pF1KB5402   313 YESE    316  

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