hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20091008/iprscan-20091008-11204103/chunk_1/iprscan-20091008-11204103.nocrc
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Query sequence: pF1KB6253
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00717                                                 237.0    1.6e-66   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00717    1/3      39    88 ..     1    53 []    80.8  1.7e-19
SM00717    2/3      91   140 ..     1    53 []    79.7  3.7e-19
SM00717    3/3     143   191 ..     1    53 []    76.6  3.1e-18

Alignments of top-scoring domains:
SM00717: domain 1 of 3, from 39 to 88: score 80.8, E = 1.7e-19
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                       k++Wt eEde+L+++v++ G+   +dW+ Ia++lp+Rt++qc++rw
   pF1KB6253    39    GKTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRW 82   

                   rnllkp<-*
                   +++l+p   
   pF1KB6253    83 QKVLNP    88   

SM00717: domain 2 of 3, from 91 to 140: score 79.7, E = 3.7e-19
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                       kg+Wt+eEd++ +e+v+kyG+   ++W+ Iak+l gR +kqcrerw
   pF1KB6253    91    IKGPWTKEEDQRVIELVQKYGP---KRWSVIAKHLKGRIGKQCRERW 134  

                   rnllkp<-*
                   +n+l+p   
   pF1KB6253   135 HNHLNP    140  

SM00717: domain 3 of 3, from 143 to 191: score 76.6, E = 3.1e-18
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                      kk++WteeEd+++++a+k++G    n+Wa+Iak lpgRt++ ++++w
   pF1KB6253   143    KKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIKNHW 185  

                   rnllkp<-*
                   +  +++   
   pF1KB6253   186 NSTMRR    191  

//