hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-05350906/chunk_1/iprscan-20080305-05350906.nocrc
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Query sequence: pF1KB8302
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00054                                                  77.9    1.2e-18   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/3      99   127 ..     1    29 []    21.3     0.14
SM00054    2/3     135   163 ..     1    29 []    37.0  2.5e-06
SM00054    3/3     183   211 ..     1    29 []    19.6     0.44

Alignments of top-scoring domains:
SM00054: domain 1 of 3, from 99 to 127: score 21.3, E = 0.14
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                          +F+ fD+++dG ++fe+f+a+l+ +   
   pF1KB8302    99    YATFLFNAFDTNHDGSVSFEDFVAGLSVI    127  

SM00054: domain 2 of 3, from 135 to 163: score 37.0, E = 2.5e-06
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       l++aF+++D ++dG I++eE+++++ks+   
   pF1KB8302   135    RLNWAFNLYDLNKDGCITKEEMLDIMKSI    163  

SM00054: domain 3 of 3, from 183 to 211: score 19.6, E = 0.44
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       ++  F+++D+++dG ++ eEf++ +++    
   pF1KB8302   183    HVESFFQKMDRNKDGVVTNEEFIESCQKD    211  

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