hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080307/iprscan-20080307-00100565/chunk_1/iprscan-20080307-00100565.nocrc
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Query sequence: pF1KB2260
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 443.2   1.4e-128   1
SM00220                                                 148.9    5.3e-40   1
SM00231                                                 129.1    4.8e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00231    1/1      30   185 ..     1   199 []   129.1  4.8e-34
SM00219    1/1     573   868 ..     1   280 []   443.2 1.4e-128
SM00220    1/1     573   868 ..     1   231 []   148.9  5.3e-40

Alignments of top-scoring domains:
SM00231: domain 1 of 1, from 30 to 185: score 129.1, E = 4.8e-34
                   *->eCneplGleggeiadsqitassstgaarelgllgwaakiaRlngngl
                      +C+++lG+ + +i+ds+i asss+++        +aa++ Rl+   +
   pF1KB2260    30    KCRYALGMQDRTIPDSDISASSSWSD-------STAARHSRLESSDG 69   

                   nedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgv.TitGrr
                        dgaWcpa+ +       ++  + ++vDL+r l++v++v+T+++  
   pF1KB2260    70 -----DGAWCPAGSVF------PKEEEYLQVDLQR-LHLVALVgTQGRHA 107  

                   rrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtges
                   +   g g++    y++  y+ d+r         +W+ +kd++      + 
   pF1KB2260   108 G---GLGKEFSRSYRLR-YSRDGR---------RWMGWKDRW------GQ 138  

                   kvFggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRlEL
                   +v+ gN d+++vvl+d++pP+vAR vR++P a      +  + ++lR+EL
   pF1KB2260   139 EVISGNEDPEGVVLKDLGPPMVARLVRFYPRA------DRVMSVCLRVEL 182  

                   lGC<-*
                   +GC   
   pF1KB2260   183 YGC    185  

SM00219: domain 1 of 1, from 573 to 868: score 443.2, E = 1.4e-128
                   *->ltlgkkLGeGaFGeVykGtlk...................ieVAVKt
                      l++++kLGeG+FGeV++++ +++++  + + + + ++++++ VAVK 
   pF1KB2260   573    LRFKEKLGEGQFGEVHLCEVDspqdlvsldfplnvrkghpLLVAVKI 619  

                   Lkeda....keeFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePl
                   L++da+++ + +Fl+E kiM++l  k pNi++LlGvc+++       +Pl
   pF1KB2260   620 LRPDAtknaRNDFLKEVKIMSRL--KDPNIIRLLGVCVQD-------DPL 660  

                   mivmEymegGdLldyLrknrpk..................lslsdLlsfA
                   ++++ yme+GdL+++L +++ +++  ++ +++++  +++++s + Ll+ A
   pF1KB2260   661 CMITDYMENGDLNQFLSAHQLEdkaaegapgdgqaaqgptISYPMLLHVA 710  

                   lQIAkGMeYLesknfvHRDLAARNcLvgenkvvKIsDFGLsRdlyddDkk
                    QIA+GM+YL+  nfvHRDLA+RNcLvgen+++KI+DFG+sR+ly +   
   pF1KB2260   711 AQIASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAG--- 757  

                   GeskdyYrkkggkggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEi
                       dyYr+    +g+++lPirWmA+E++  gkFt++SDVW+FGV+LWE+
   pF1KB2260   758 ----DYYRV----QGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEV 799  

                   ftlGeqPYpgeiqqfmsneevleylkkGyRlpkPendl..p.iSsvtCPd
                   + l+   + g+    +++e+v+e+  + +R    + +l++p+     CP+
   pF1KB2260   800 LMLCRAQPFGQ----LTDEQVIENAGEFFRDQGRQVYLsrPpA----CPQ 841  

                   elYdlMlqCWaedPedRPtFselverl<-*
                    lY+lMl+CW ++ e+RP Fs+l+++l   
   pF1KB2260   842 GLYELMLRCWSRESEQRPPFSQLHRFL    868  

SM00220: domain 1 of 1, from 573 to 868: score 148.9, E = 5.3e-40
                   *->YellkklGkGaFGkVylardkk................tgrlvAiKv
                       ++ +klG+G FG+V+l+   ++++  + + + + +++   lvA+K+
   pF1KB2260   573    LRFKEKLGEGQFGEVHLCEVDSpqdlvsldfplnvrkgHPLLVAVKI 619  

                   ik........erilrEikiLkk.dHPNIVkLydvfed.dklylVmEyceG
                   ++++ +++ ++++l+E+ki+++ + PNI++L++v++ +d l+++++y+e+
   pF1KB2260   620 LRpdatknarNDFLKEVKIMSRlKDPNIIRLLGVCVQdDPLCMITDYMEN 669  

                   dlGdLfdllkkrgrrglrk.............vlsE.earfyfrQilsaL
                     GdL ++l  ++ + +  ++ +++++  +++ +s ++  ++++Qi+s++
   pF1KB2260   670 --GDLNQFLSAHQLEDKAAegapgdgqaaqgpTISYpMLLHVAAQIASGM 717  

                   eYLHsqgIiHRDLKPeNiLLds..hvKlaDFGlArql.........ttfv
                    YL  ++++HRDL   N L+ ++ ++K+aDFG++r l  ++  + +   v
   pF1KB2260   718 RYLATLNFVHRDLATRNCLVGEnfTIKIADFGMSRNLyagdyyrvqGRAV 767  

                   GTpeYmAPEvl...gYgkpavDiWSlGcilyE..lltGkpPFp..qldli
                       +mA E +  +++++ a+D+W++G++l+E  +l++  PF + +++++
   pF1KB2260   768 LPIRWMAWECIlmgKFTT-ASDVWAFGVTLWEvlMLCRAQPFGqlTDEQV 816  

                   fkkig..................SpeakdLikklLvkdPekRlta.eaLe
                   +++ g+  ++ ++  + ++++  ++ + +L+ +++ ++ e+R+  +++ +
   pF1KB2260   817 IENAGeffrdqgrqvylsrppacPQGLYELMLRCWSRESEQRPPFsQLHR 866  

                   deldikaHPff<-*
                            f+   
   pF1KB2260   867 ---------FL    868  

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