hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-16062517/chunk_1/iprscan-20080305-16062517.nocrc
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Query sequence: pF1KA0866
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1309.9          0   1
SM00015                                                  25.3     0.0086   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      79   784 ..     1   771 []  1309.9        0
SM00015    1/1     785   807 ..     1    23 []    25.3   0.0086

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 79 to 784: score 1309.9, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      +nppkf +VeDm++Lt+LnE++vlhNL+ RY ++lIYTY+Gl++v+v
   pF1KA0866    79    MNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVV 125  

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NPYk l piY++ ++++Y+      Gk+r+E+pPH++AiAD AYr+Ml++
   pF1KA0866   126 NPYKHL-PIYSEKIVDMYK------GKKRHEMPPHIYAIADTAYRSMLQD 168  

                   keNQsIiISGESGAGKTEatKkimqYLAavsg.........svesvedqi
                   +e+QsI+++GESGAGKTE+tKk++qYLA v+++++++++++ ++ +e q+
   pF1KA0866   169 REDQSILCTGESGAGKTENTKKVIQYLAVVASshkgkkdtsITGELEKQL 218  

                   LesNPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEK
                   L++NPiLEAFGNAKTv+N+NSSRFGKfi+I+Fd +G ivGA+Ie+YLLEK
   pF1KA0866   219 LQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEK 268  

                   SRVVsQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqgg
                   SR ++Qa++ER +HIFY++ aGa e +++ l+L+    +  +Y +L++g 
   pF1KA0866   269 SRAIRQARDERTFHIFYYMIAGAKEKMRSDLLLE----GFNNYTFLSNG- 313  

                   tpfankryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFr
                               + ++   D e F+eT E    Am ++GfseeEq sI++
   pF1KA0866   314 -----------FVPIPAAQDDEMFQETVE----AMAIMGFSEEEQLSILK 348  

                   ilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeL
                   +++++L LGNi F+++rn   ++a+     +d +++qk+++L+g++++++
   pF1KA0866   349 VVSSVLQLGNIVFKKERN--TDQAS----MPDNTAAQKVCHLMGINVTDF 392  

                   ekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkr
                    +++++++ik+g++   v+ k++++eqA +a+ ALAKa Y+RLF W+  r
   pF1KA0866   393 TRSILTPRIKVGRD---VVQKAQTKEQADFAVEALAKATYERLFRWILTR 439  

                   INksl......sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnq
                   +Nk+l++++++ a+f G+LDI+GFEiFe+NSFEQ+CINy+NEKLQQ+Fn+
   pF1KA0866   440 VNKALdkthrqGASFLGILDIAGFEIFEVNSFEQLCINYTNEKLQQLFNH 489  

                   hvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDE
                    +F lEQEEY+rEGIeW fIdF+l D+Qpci+LIE +  +P+G+l+lLDE
   pF1KA0866   490 TMFILEQEEYQREGIEWNFIDFGL-DLQPCIELIERPN-NPPGVLALLDE 537  

                   eClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrf
                   eC+f   Pk+TD++F+eKL     ++  ++hp+f+kp         k  +
   pF1KA0866   538 ECWF---PKATDKSFVEKL-----CTEQGSHPKFQKP---------KQLK 570  

                   grtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFp
                   ++t+F+i HYAG+V+Yn+  +L KN+D+L++++ +Ll +S+++++a+L++
   pF1KA0866   571 DKTEFSIIHYAGKVDYNASAWLTKNMDPLNDNVTSLLNASSDKFVADLWK 620  

                   eeadqsssaakekssggagksrkagr.r.epskgtisskkrppTvGsqFk
                   ++    +   +    +++++s+ ++++ ++        k++++TvG+++k
   pF1KA0866   621 DVDRIVGLDQM----AKMTESSLPSAsKtK--------KGMFRTVGQLYK 658  

                   .sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEni
                   ++L +Lm+tL++t+P+F+RCI+PN+eK++g+ da lVl QLr++GvLE+i
   pF1KA0866   659 eQLGKLMTTLRNTTPNFVRCIIPNHEKRSGKLDAFLVLEQLRCNGVLEGI 708  

                   RIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkaceal
                   RI+r GFP+R+ f+eF+qRY+ +l+ +  p+g       f+d k+ac ++
   pF1KA0866   709 RICRQGFPNRIVFQEFRQRYE-ILAANAIPKG-------FMDGKQACILM 750  

                   LqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   +++l+       ld++ y+iG +K+F+R  g+la+LEe+R+    
   pF1KA0866   751 IKALE-------LDPNLYRIGQSKIFFR-TGVLAHLEEERDL    784  

SM00015: domain 1 of 1, from 785 to 807: score 25.3, E = 0.0086
                   *->rleraAiiIQaawRGylaRkryk<-*
                      +++  ++ +Qa++RGylaRk +    
   pF1KA0866   785    KITDVIMAFQAMCRGYLARKAFA    807  

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