hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-17384170/chunk_1/iprscan-20080305-17384170.nocrc
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Query sequence: pF1KSDA0638
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  71.5    1.1e-16   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1    1257  1372 ..     1    82 []    71.5  1.1e-16

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 1257 to 1372: score 71.5, E = 1.1e-16
                   *->vikeGwLlkks..k.swkkryfvLfn..gvLlyyksk...kpkgsip
                       +++G+L k++++ +swkkr+fv+++ +++L+yy +k+++k+kg+i 
  pF1KSDA063  1257    KVCRGYLVKMGgkIkSWKKRWFVFDRlkRTLSYYVDKhetKLKGVIY 1303 

                   Lsgc.svre.p.......................cFeivt.drtlllqAe
                    + +++v+ ++ ++  +++  +     +++++  +F+++t+dr +++ A+
  pF1KSDA063  1304 FQAIeEVYYdHlrsaakkrffrftmvtespnpalTFCVKThDRLYYMVAP 1353 

                   seeereeWvealqsaiaka<-*
                   s+e ++ W++ +   ++ +   
  pF1KSDA063  1354 SAEAMRIWMDVIVTGAEGY    1372 

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