hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-12351635/chunk_1/iprscan-20080305-12351635.nocrc
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Query sequence: pF1KSDA0380
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 234.1    1.2e-65   1
SM00228                                                  76.5    3.3e-18   1
SM00315                                                  61.7    9.1e-14   1
SM00233                                                  43.0    3.9e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00228     1/1      55   123 ..     1    80 []    76.5  3.3e-18
SM00315     1/1     313   432 ..     1   121 []    61.7  9.1e-14
SM00325     1/1     738   922 ..     1   211 []   234.1  1.2e-65
SM00233     1/1     966  1081 ..     1    82 []    43.0  3.9e-08

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 55 to 123: score 76.5, E = 3.3e-18
                   *->gglGfsivg..gifvssvvpGspAakaGrkslglLkvGDvIleVNGe
                       g+Gf+++g++ ++v sv pG++A kaG      +k+GD+I++VNG 
  pF1KSDA038    55    HGFGFTVSGdrIVLVQSVRPGGAAMKAG------VKEGDRIIKVNG- 94   

                   tsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   t v++ +h+e+v+l+k+      G  v Lt+l  +   
  pF1KSDA038    95 TMVTNSSHLEVVKLIKS------GAYVALTLLGSS    123  

SM00315: domain 1 of 1, from 313 to 432: score 61.7, E = 9.1e-14
                   *->sleklLendpiGrllFreFLksefseykenleFWlaveefkkaedee
                      +lekl  + p+ + +F ++  s+ +     l+F+l++e +++a  ++
  pF1KSDA038   313    DLEKLK-SRPAHLGVFLRYIFSQADP--SPLLFYLCAEVYQQASPKD 356  

                   rsskAreIydkylspeapkesevnldsdtreeieenlee..pppdlFdeA
                    +s +++I++ +l+++ap   +v +++ + +ei ++l +++ ++++++eA
  pF1KSDA038   357 SRSLGKDIWNIFLEKNAPL--RVKIPEMLQAEIDSRLRNseDARGVLCEA 404  

                   qrevyell..ekdsyprFLkSdyYlrfL<-*
                   q++ +   +++ + y+  +   + + +    
  pF1KSDA038   405 QEAAMPEIqeQIHDYRTKRTLGLGSLYG    432  

SM00325: domain 1 of 1, from 738 to 922: score 234.1, E = 1.2e-65
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v++EL++TE++++r+L++l+ +f++++kke+      l++++e+ +l
  pF1KSDA038   738    VINELFVTEASHLRTLRVLDLIFYQRMKKEN------LMPREELARL 778  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F+ N++e++e+H+++++++++ +ee           +++i+ +++++ + 
  pF1KSDA038   779 FP-NLPELIEIHNSWCEAMKKLREE-----------GPIIKEISDLMLAR 816  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   F+++ ++ee+ ++ +++cs ++ alel+k+  k++k ++Fq f++e+es+
  pF1KSDA038   817 FDGP-AREELQQVAAQFCSYQSIALELIKT--KQRKESRFQLFMQEAESH 863  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   p+cr     rl+L +l+i  +QRltkYpLLL+ ++kht+ + +++e+L++
  pF1KSDA038   864 PQCR-----RLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCR 908  

                   AleaikelasqvNe<-*
                   A + ++e++++vNe   
  pF1KSDA038   909 ARDQCREILKYVNE    922  

SM00233: domain 1 of 1, from 966 to 1081: score 43.0, E = 3.9e-08
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk.............
                      +i+eG L+++ +k++  + ++ L ++ L++ ++ +++   + ++++ 
  pF1KSDA038   966    MIHEGPLTWRIsKdKTLDLHVLLLEDLLVLLQKQdeklllkchskta 1012 

                   ........kpkgsipLsgcsvre.p....cFeivt.dr.....tlllqAe
                    ++++++++ ++++ L+ + +r  + ++++F i+++++ ++++ ++l A 
  pF1KSDA038  1013 vgssdskqTFSPVLKLNAVLIRSvAtdkrAFFIICtSKlgppqIYELVAL 1062 

                   seeereeWvealqsaiaka<-*
                   ++++++ W+e l++a+++a   
  pF1KSDA038  1063 TSSDKNTWMELLEEAVRNA    1081 

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