hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080306/iprscan-20080306-10282865/chunk_1/iprscan-20080306-10282865.nocrc
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Query sequence: pF1KA1590
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 592.7   1.3e-173   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1       1   366 [.     1   404 []   592.7 1.3e-173

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 1 to 366: score 592.7, E = 1.3e-173
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn..
                        +++VavRv   RP n+rEk+ +    ++ +++++++++t+t+ + 
   pF1KA1590     1    MASVKVAVRV---RPMNRREKDLE----AKFIIQMeksktTITNLki 40   

                   ...............FtFDkVFWry..d.vddpsasQedVFeevaaPLvd
                   +++++++++++++++Ft+D++F  y+ d+ +++++sQe+VF++++  +v 
   pF1KA1590    41 peggtgdsgrertktFTYDFSF--YsaDtKSPDYVSQEMVFKTLGTDVVK 88   

                   saldGYNvaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiI
                   sa++GYN+ ++FAYGQTGSGK+yTM+G +                + G+I
   pF1KA1590    89 SAFEGYNA-CVFAYGQTGSGKSYTMMGNS---------------GDSGLI 122  

                   PRaledlFekide........fsVkvSylEIYNEkirDLLspspenSksr
                   PR++e lF +i+e+++ ++ +f  +vSylEIYNE++rDLL  +++     
   pF1KA1590   123 PRICEGLFSRINEttrwdeasFRTEVSYLEIYNERVRDLLRRKSSK---- 168  

                   GkhakqsskkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSa
                             +Lr+rE+++                g+yV++L+ + V ++
   pF1KA1590   169 --------TFNLRVREHPK---------------EGPYVEDLSKHLVQNY 195  

                   eevlellerGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadekt
                    +v+el++ Gn nRt+aaT mN+ SSRSHaiFti+ +q+           
   pF1KA1590   196 GDVEELMDAGNINRTTAATGMNDVSSRSHAIFTIKFTQA----------- 234  

                   esstnegteqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLl
                     +++++    ++sk++LVDLAGSERa+ Tg  a+G+RLkE++nINkSL 
   pF1KA1590   235 --KFDSEMPCETVSKIHLVDLAGSERADATG--ATGVRLKEGGNINKSLV 280  

                   aLGnVInALaddshdsaes.eatkqaggkssHIPYRDSKLTrLLQdSLGG
                   +LGnVI+ALad      + ++a+  a++k+ ++PYRDS+LT+LL+dSLGG
   pF1KA1590   281 TLGNVISALAD-----LSQdAANTLAKKKQVFVPYRDSVLTWLLKDSLGG 325  

                   NsKTlMIanvSPsssnyeETlsTLrFAsRaksIknkpavne<-*
                   NsKT+MIa++SP++ ny+ETlsTLr+A+Rak+I nkp++ne   
   pF1KA1590   326 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINE    366  

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