hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20090918/iprscan-20090918-19445928/chunk_1/iprscan-20090918-19445928.nocrc
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Query sequence: pF1KA1273
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  53.2    3.4e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/1     298   431 ..     1    92 []    53.2  3.4e-11

Alignments of top-scoring domains:
SM00382: domain 1 of 1, from 298 to 431: score 53.2, E = 3.4e-11
                   *->pgevvllvGppGsGKTTlaralarllgp.gviyidge.......ggq
                        +++ll+GppG+GKT +a++la ++g +  i+  g+    +++g+ 
   pF1KA1273   298    LYRHILLYGPPGTGKTLFAKKLALHSGMdYAIMTGGDvapmgreGVT 344  

                   rirlalalark....dvlllDEitslld......................
                    + ++++ a+ ++++ +l++DE++++l+++  ++ +++++  ++  + + 
   pF1KA1273   345 AMHKLFDWANTsrrgLLLFMDEADAFLRkrateeiskdlratlnaflyhm 394  

                   ......vtviattn.dldpallrr.rfdrrivllril<-*
                   ++++++  +++++n +++ + ++ +r+d  ++++++    
   pF1KA1273   395 gqhsnkFMLVLASNlPEQFDCAINsRIDVMVHFDLPQ    431  

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