hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-23100409/chunk_1/iprscan-20080305-23100409.nocrc
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Query sequence: pF1KA1116
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00582                                                 157.7    1.2e-42   1
SM00360                                                  65.5    6.8e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00582    1/1       6   136 ..     1   146 []   157.7  1.2e-42
SM00360    1/1     478   547 ..     1   121 []    65.5  6.8e-15

Alignments of top-scoring domains:
SM00582: domain 1 of 1, from 6 to 136: score 157.7, E = 1.2e-42
                   *->afeqkLesLldskTfnsqesIqtlTkwaienashakeeIVelwekyi
                      +f+++L sL+d k+++s+++++++Tk+ai++++++k+ +V+++ek i
   pF1KA1116     6    TFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKH-VVQSVEKFI 51   

                   kkapsdkqKLplLYLldsIvqnskrkyaknseSsNvtgsefkdelgpvfq
                    k++++ +K+p+LY++dsIv++s+++           +++ kd++ p+f+
   pF1KA1116    52 QKCKPE-YKVPGLYVIDSIVRQSRHQ-----------FGQEKDVFAPRFS 89   

                   kalrdvdealqkaGtpeevkkkirrllniWeeRgvFppevlqpleeklk<
                   +     +++l+ +  p + k+ki+r+ln+W++++vF+ e++qpl ++ + 
   pF1KA1116    90 NNIISTFQNLYRC--PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA  136  

                   -*
                     
   pF1KA1116     -    -    

SM00360: domain 1 of 1, from 478 to 547: score 65.5, E = 6.8e-15
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      tl+Vg +  ++++t++dL +lF              ++fG ++s+ +
   pF1KA1116   478    TLWVGQV--DKKATQQDLTNLF--------------EEFGQIESINM 508  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   ++                            +G+a+V +  ++dA +A  +
   pF1KA1116   509 IPP---------------------------RGCAYVCMVHRQDAFRA--L 529  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++l  s+ +++  g +    +++    
   pF1KA1116   530 QKLS-SGSYKI--GSKV---IKIA    547  

//