hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20090109/iprscan-20090109-17131275/chunk_1/iprscan-20090109-17131275.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pF1KB5402
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00782.11.ls Dual specificity phosphatase, catalytic dom   252.2    9.9e-73   1
PF00782.11.fs Dual specificity phosphatase, catalytic dom   250.4    3.6e-72   1
PF00581.10.ls Rhodanese-like domain                          29.2    1.4e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00581.10.ls   1/1       7   135 ..     1   132 []    29.2  1.4e-05
PF00782.11.fs   1/1     178   316 ..     1   173 []   250.4  3.6e-72
PF00782.11.ls   1/1     178   316 ..     1   173 []   252.2  9.9e-73

Alignments of top-scoring domains:
PF00581.10.ls: domain 1 of 1, from 7 to 135: score 29.2, E = 1.4e-05
                   *->tagelkalles..apkliliDvRspefGeryeyegGHIpgAvNvple
                         +l+++l  + a++++++D+R++     ++++ + ++g+ Nv+  
   pF1KB5402     7    DGRQLRKMLRKeaAARCVVLDCRPY-----LAFAASNVRGSLNVN-- 46   

                   eeiealldrsgilpdi.eklhllkdpeelaklfgelgsskdkrvivycrs
                     +   ++r+ ++  + +    l+d + +a+l++e g +    v+v++++
   pF1KB5402    47 --LNSVVLRRARG-GAvSARYVLPDEAARARLLQEGGGG-VAAVVVLDQG 92   

                   grdl..lrnrrsalaalllkklgy....peVyiLkGGykeWlak<-*
                   +r+ ++lr+ ++a+++l+ ++l + + +p+Vy+LkGGy+ ++ +   
   pF1KB5402    93 SRHWqkLREESAARVVLT-PLLAClpagPRVYFLKGGYETFYSE    135  

PF00782.11.fs: domain 1 of 1, from 178 to 316: score 250.4, E = 3.6e-72
                   *->gpveilphnlYLGsystasadlaflsklgItyviNvteevpnpfelc
                      gpveilp+ lYLGs+++as +++fl++l+It+ +Nv++    ++e+c
   pF1KB5402   178    GPVEILPF-LYLGSAYHAS-KCEFLANLHITALLNVSRR---TSEAC 219  

                   kNdRhyteayflknsgilylriPhveDhIeYyhiawnhetkiskylpeav
                                + + +y++iP veD         +h+++is +++ea+
   pF1KB5402   220 -------------MTHLHYKWIP-VED---------SHTADISSHFQEAI 246  

                   eFIdkarqkggkVLVHCqAGiSRSAtliiAYLMktrnmslneAysfvyvY
                   +FId++r+kggkVLVHC AGiSRS+t+++AYLMkt++++l+eA++++   
   pF1KB5402   247 DFIDCVREKGGKVLVHCEAGISRSPTICMAYLMKTKQFRLKEAFDYI--- 293  

                   hikerRcpaisPNfgFlrQLleyerk<-*
                     k+rR +++sPNfgF++QLl+ye     
   pF1KB5402   294 --KQRR-SMVSPNFGFMGQLLQYESE    316  

PF00782.11.ls: domain 1 of 1, from 178 to 316: score 252.2, E = 9.9e-73
                   *->gpveilphnlYLGsystasadlaflsklgItyviNvteevpnpfelc
                      gpveilp+ lYLGs+++as +++fl++l+It+ +Nv++    ++e+c
   pF1KB5402   178    GPVEILPF-LYLGSAYHAS-KCEFLANLHITALLNVSRR---TSEAC 219  

                   kNdRhyteayflknsgilylriPhveDhIeYyhiawnhetkiskylpeav
                                + + +y++iP veD         +h+++is +++ea+
   pF1KB5402   220 -------------MTHLHYKWIP-VED---------SHTADISSHFQEAI 246  

                   eFIdkarqkggkVLVHCqAGiSRSAtliiAYLMktrnmslneAysfvyvY
                   +FId++r+kggkVLVHC AGiSRS+t+++AYLMkt++++l+eA++++   
   pF1KB5402   247 DFIDCVREKGGKVLVHCEAGISRSPTICMAYLMKTKQFRLKEAFDYI--- 293  

                   hikerRcpaisPNfgFlrQLleyerk<-*
                     k+rR +++sPNfgF++QLl+ye     
   pF1KB5402   294 --KQRR-SMVSPNFGFMGQLLQYESE    316  

//