hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-05005810/chunk_1/iprscan-20080306-05005810.nocrc
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Query sequence: pF1KB8825
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    273.4    7.4e-91   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    275.3    1.1e-79   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1     117   365 ..     1   272 []   273.4  7.4e-91
PF00001.12.ls   1/1     117   365 ..     1   272 []   275.3  1.1e-79

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 117 to 365: score 273.4, E = 7.4e-91
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+ V +v+l  +   ++t++f+l+LAvAD L++ltlp+wa+ ++v+
   pF1KB8825   117    GNGAVAAVLLSRRTALSSTDTFLLHLAVADTLLVLTLPLWAVDAAVQ 163  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                      W+fGs lCk+ +al+ +n+ya+ llL++IS+DRYl Ivh+ + +rr 
   pF1KB8825   164 ---WVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLYRRG 210  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                     p r  +++l+vW l+ll++lP ++f + ++ e  n    +t C  +fp
   pF1KB8825   211 P-PARVTLTCLAVWGLCLLFALPDFIFLSAHHDERLN----ATHCQYNFP 255  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                    v        + ++ +l ++ gF+lPllv+++cY +Il +l  ++     
   pF1KB8825   256 QVG-------RTALRVLQLVAGFLLPLLVMAYCYAHILAVLLVSRG---- 294  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                       +++ +a+++++vvvv+F+lCW+Py++v+l+d l++l+     +C  
   pF1KB8825   295 ----QRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMdLGAL-ARNCGR 339  

                   ervlptallvtlwLayvNsclNPiIY<-*
                   e  ++ a++vt  L+y ++clNP++Y   
   pF1KB8825   340 ESRVDVAKSVTSGLGYMHCCLNPLLY    365  

PF00001.12.ls: domain 1 of 1, from 117 to 365: score 275.3, E = 1.1e-79
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+ V +v+l  +   ++t++f+l+LAvAD L++ltlp+wa+ ++v+
   pF1KB8825   117    GNGAVAAVLLSRRTALSSTDTFLLHLAVADTLLVLTLPLWAVDAAVQ 163  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                      W+fGs lCk+ +al+ +n+ya+ llL++IS+DRYl Ivh+ + +rr 
   pF1KB8825   164 ---WVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLYRRG 210  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                     p r  +++l+vW l+ll++lP ++f + ++ e  n    +t C  +fp
   pF1KB8825   211 P-PARVTLTCLAVWGLCLLFALPDFIFLSAHHDERLN----ATHCQYNFP 255  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                    v        + ++ +l ++ gF+lPllv+++cY +Il +l  ++     
   pF1KB8825   256 QVG-------RTALRVLQLVAGFLLPLLVMAYCYAHILAVLLVSRG---- 294  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                       +++ +a+++++vvvv+F+lCW+Py++v+l+d l++l+     +C  
   pF1KB8825   295 ----QRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMdLGAL-ARNCGR 339  

                   ervlptallvtlwLayvNsclNPiIY<-*
                   e  ++ a++vt  L+y ++clNP++Y   
   pF1KB8825   340 ESRVDVAKSVTSGLGYMHCCLNPLLY    365  

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