hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-11392357/chunk_1/iprscan-20080306-11392357.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pF1KB7144
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    159.2    4.6e-53   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    161.1    2.6e-45   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      51   305 ..     1   272 []   159.2  4.6e-53
PF00001.12.ls   1/1      51   305 ..     1   272 []   161.1  2.6e-45

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 51 to 305: score 159.2, E = 4.6e-53
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                       N+ +++v++r  + ++ + if++NL+vADL  +l+lp+ ++yy   
   pF1KB7144    51    ANSAALWVLCRFISKKNKAIIFMINLSVADLAHVLSLPLRIYYYIS- 96   

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    ++Wpf +alC l  +l ++nmyaSi++Lt+IS+ R+    +P+r+r + 
   pF1KB7144    97 -HHWPFQRALCLLCFYLKYLNMYASICFLTCISLQRCFFLLKPFRARDWK 145  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +  r  +++++++W++   ++lP+++++++ ++++ +  +++   +  + 
   pF1KB7144   146 R--RYDVGISAAIWIVVGTACLPFPILRSTDLNNNKS--CFADLGYKQMN 191  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                    v+       lv++++++ l gFv+P+++i++c + + + lr+ ++    
   pF1KB7144   192 AVA-------LVGMITVAELAGFVIPVIIIAWCTWKTTISLRQPPMAF-- 232  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                    +  s+++ka++++++   vF++C++Py+i ++  t  ++ i  +ssC+ 
   pF1KB7144   233 -QGISERQKALRMVFMCAAVFFICFTPYHINFIFYTMVkETI--ISSCPV 279  

                   ervlptallvtlwLayvNsclNPiIY<-*
                    r+  ++ +++l+La + + l+Pi+Y   
   pF1KB7144   280 VRIALYFHPFCLCLASLCCLLDPILY    305  

PF00001.12.ls: domain 1 of 1, from 51 to 305: score 161.1, E = 2.6e-45
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                       N+ +++v++r  + ++ + if++NL+vADL  +l+lp+ ++yy   
   pF1KB7144    51    ANSAALWVLCRFISKKNKAIIFMINLSVADLAHVLSLPLRIYYYIS- 96   

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    ++Wpf +alC l  +l ++nmyaSi++Lt+IS+ R+    +P+r+r + 
   pF1KB7144    97 -HHWPFQRALCLLCFYLKYLNMYASICFLTCISLQRCFFLLKPFRARDWK 145  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +  r  +++++++W++   ++lP+++++++ ++++ +  +++   +  + 
   pF1KB7144   146 R--RYDVGISAAIWIVVGTACLPFPILRSTDLNNNKS--CFADLGYKQMN 191  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                    v+       lv++++++ l gFv+P+++i++c + + + lr+ ++    
   pF1KB7144   192 AVA-------LVGMITVAELAGFVIPVIIIAWCTWKTTISLRQPPMAF-- 232  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                    +  s+++ka++++++   vF++C++Py+i ++  t  ++ i  +ssC+ 
   pF1KB7144   233 -QGISERQKALRMVFMCAAVFFICFTPYHINFIFYTMVkETI--ISSCPV 279  

                   ervlptallvtlwLayvNsclNPiIY<-*
                    r+  ++ +++l+La + + l+Pi+Y   
   pF1KB7144   280 VRIALYFHPFCLCLASLCCLLDPILY    305  

//