hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-15260230/chunk_1/iprscan-20080305-15260230.nocrc
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Query sequence: pF1KB5188
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    211.8    1.8e-70   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    213.7    3.9e-61   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1     126   380 ..     1   272 []   211.8  1.8e-70
PF00001.12.ls   1/1     126   380 ..     1   272 []   213.7  3.9e-61

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 126 to 380: score 211.8, E = 1.8e-70
                   *->GNlLVilvilrtkklr...tptnifilNLAvADLLflltlppwalyy
                      GN+ Vi+++++  kl+  +++++ifi+NL+v DLLfll  p+++   
   pF1KB5188   126    GNSTVIFAVVKKSKLHwcnNVPDIFIINLSVVDLLFLLGMPFMIHQL 172  

                   lvggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryr
                   + +g  W fG+ +C l ta+d  + ++S + Lta++iDRYlA vhP+++ 
   pF1KB5188   173 MGNG-VWHFGETMCTLITAMDANSQFTSTYILTAMAIDRYLATVHPISST 221  

                   rrrtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttCli
                    +r  p +A +vi+l W+l+++   P  l+  + ++++g     +  C+i
   pF1KB5188   222 KFRK-PSVATLVICLLWALSFISITPVWLYARLIPFPGG-----AVGCGI 265  

                   dfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrark
                     p+++     t+l++++l+ ++++F lP++vi+ +Y rIl ++ +++ +
   pF1KB5188   266 RLPNPD-----TDLYWFTLYQFFLAFALPFVVITAAYVRILQRMTSSVAP 310  

                   gaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsss
                     ++  + + +++++t +++ +vF++CW+Py +++l +  ++ ++     
   pF1KB5188   311 ASQRSIRLRTKRVTRTAIAICLVFFVCWAPYYVLQLTQLSIsRPTL---- 356  

                   CelervlptallvtlwLayvNsclNPiIY<-*
                        +  +++ +++ L+y+NsclNP++Y   
   pF1KB5188   357 -----TFVYLYNAAISLGYANSCLNPFVY    380  

PF00001.12.ls: domain 1 of 1, from 126 to 380: score 213.7, E = 3.9e-61
                   *->GNlLVilvilrtkklr...tptnifilNLAvADLLflltlppwalyy
                      GN+ Vi+++++  kl+  +++++ifi+NL+v DLLfll  p+++   
   pF1KB5188   126    GNSTVIFAVVKKSKLHwcnNVPDIFIINLSVVDLLFLLGMPFMIHQL 172  

                   lvggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryr
                   + +g  W fG+ +C l ta+d  + ++S + Lta++iDRYlA vhP+++ 
   pF1KB5188   173 MGNG-VWHFGETMCTLITAMDANSQFTSTYILTAMAIDRYLATVHPISST 221  

                   rrrtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttCli
                    +r  p +A +vi+l W+l+++   P  l+  + ++++g     +  C+i
   pF1KB5188   222 KFRK-PSVATLVICLLWALSFISITPVWLYARLIPFPGG-----AVGCGI 265  

                   dfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrark
                     p+++     t+l++++l+ ++++F lP++vi+ +Y rIl ++ +++ +
   pF1KB5188   266 RLPNPD-----TDLYWFTLYQFFLAFALPFVVITAAYVRILQRMTSSVAP 310  

                   gaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsss
                     ++  + + +++++t +++ +vF++CW+Py +++l +  ++ ++     
   pF1KB5188   311 ASQRSIRLRTKRVTRTAIAICLVFFVCWAPYYVLQLTQLSIsRPTL---- 356  

                   CelervlptallvtlwLayvNsclNPiIY<-*
                        +  +++ +++ L+y+NsclNP++Y   
   pF1KB5188   357 -----TFVYLYNAAISLGYANSCLNPFVY    380  

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