hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20080307/iprscan-20080307-00100565/chunk_1/iprscan-20080307-00100565.nocrc
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Query sequence: pF1KB2260
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF07714.7.ls Protein tyrosine kinase 416.2 4.3e-122 1
PF07714.7.fs Protein tyrosine kinase 414.3 1.6e-121 1
PF00069.15.fs Protein kinase domain 127.3 4.7e-36 1
PF00069.15.ls Protein kinase domain 129.2 1e-35 1
PF00754.15.fs F5/8 type C domain 116.3 1.6e-32 1
PF00754.15.ls F5/8 type C domain 118.1 2.3e-32 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00754.15.fs 1/1 46 182 .. 1 163 [] 116.3 1.6e-32
PF00754.15.ls 1/1 46 182 .. 1 163 [] 118.1 2.3e-32
PF07714.7.fs 1/1 573 868 .. 1 272 [] 414.3 1.6e-121
PF00069.15.fs 1/1 573 876 .] 1 287 [] 127.3 4.7e-36
PF00069.15.ls 1/1 573 876 .] 1 287 [] 129.2 1e-35
PF07714.7.ls 1/1 573 868 .. 1 272 [] 416.2 4.3e-122
Alignments of top-scoring domains:
PF00754.15.fs: domain 1 of 1, from 46 to 182: score 116.3, E = 1.6e-32
*->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse
i+aSs++s+s++a ++rL s+ DG+ +aW++
pF1KB2260 46 DISASSSWSDSTAARHSRLESS-----DGD-----------GAWCP- 75
kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn..gyvksYkiqy
+ s+ ++ ++lqvDL++ + + v tqgr +gg ++++ +sY++ y
pF1KB2260 76 AGSVF---PKEEEYLQVDLQRLHLVALVGTQGRHAGGLgkEFSRSYRLRY 122
SdDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikA
S DG + W +kd ++++++ +gn+d ++v ++ pp++A
pF1KB2260 123 SRDG-R--RWMGWKD--------RWgQEVIsGNeDPEgVVLKDLGPPMVA 161
RYvRivptswnggggiasraEl<-*
R vR++p + + ++r+El
pF1KB2260 162 RLVRFYPR-ADRVMSVCLRVEL 182
PF00754.15.ls: domain 1 of 1, from 46 to 182: score 118.1, E = 2.3e-32
*->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse
i+aSs++s+s++a ++rL s+ DG+ +aW++
pF1KB2260 46 DISASSSWSDSTAARHSRLESS-----DGD-----------GAWCP- 75
kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn..gyvksYkiqy
+ s+ ++ ++lqvDL++ + + v tqgr +gg ++++ +sY++ y
pF1KB2260 76 AGSVF---PKEEEYLQVDLQRLHLVALVGTQGRHAGGLgkEFSRSYRLRY 122
SdDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikA
S DG + W +kd ++++++ +gn+d ++v ++ pp++A
pF1KB2260 123 SRDG-R--RWMGWKD--------RWgQEVIsGNeDPEgVVLKDLGPPMVA 161
RYvRivptswnggggiasraEl<-*
R vR++p + + ++r+El
pF1KB2260 162 RLVRFYPR-ADRVMSVCLRVEL 182
PF07714.7.fs: domain 1 of 1, from 573 to 868: score 414.3, E = 1.6e-121
*->lklgkkLGeGaFGeVykGtlkg............sgdgteikVAVKt
l++ +kLGeG+FGeV++++ + +++ + + + + +g+ + VAVK+
pF1KB2260 573 LRFKEKLGEGQFGEVHLCEVDSpqdlvsldfplnVRKGHPLLVAVKI 619
LkeigaseeeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpgl
L++ +a+ + r dFl+E++iM++l + pNi+rLlGvc++ ++P l
pF1KB2260 620 LRP-DATKNA--RNDFLKEVKIMSRL-KDPNIIRLLGVCVQ-DDP----L 660
yiVtEymegGdLldfLrkhr................egrpLtlkdLlsfa
+++t yme+GdL fL +h +++ ++ +++++ +g+ ++ ++Ll+ a
pF1KB2260 661 CMITDYMENGDLNQFLSAHQledkaaegapgdgqaaQGPTISYPMLLHVA 710
lQiAkGMeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyY
+QiA+GM YL+ nfvHRDLA+RNcLV+en+++KI+DFG++R +y dyY
pF1KB2260 711 AQIASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYY 760
vrkkgggklPvkWmAPEslkygkFtskSDVWSFGVlLWEiftlGe.qPFY
r++g + lP++WmA E++ gkFt++SDVW+FGV+LWE++ l++ qP +
pF1KB2260 761 -RVQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEVLMLCRaQP-F 808
pgmsneevlellyedGyR.......LprPenCPdelYdlMlqCWaedPed
+++e+v+e + R+++++ L rP+ CP+ lY+lMl+CW ++ e+
pF1KB2260 809 GQLTDEQVIENA-GEFFRdqgrqvyLSRPPACPQGLYELMLRCWSRESEQ 857
RPtFselveeL<-*
RP Fs+l+++L
pF1KB2260 858 RPPFSQLHRFL 868
PF00069.15.fs: domain 1 of 1, from 573 to 876: score 127.3, E = 4.7e-36
*->yelleklGsGsfGtVykakhkgtgk................iVAvKi
++++eklG+G fG+V ++ + ++ + + + + +++++ +VAvKi
pF1KB2260 573 LRFKEKLGEGQFGEVHLCEVDSPQDlvsldfplnvrkghplLVAVKI 619
ikkrkekskkdktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEy
++ + +k +++++ E++i+ rL+ pNI+rl++v+ +d l+++++y
pF1KB2260 620 LRPDATKN--ARNDFLK-EVKIMSRLKDPNIIRLLGVCVQDDPLCMITDY 666
cegGLrvldLfdyls..............e..trrkgpllfsedeakkia
+e+G dL +ls ++ +++ ++ ++++++ ++ ++ s+ + ++a
pF1KB2260 667 MENG----DLNQFLSahqledkaaegapgDgqAAQGPTI--SYPMLLHVA 710
lQilrgleYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.
Qi++g+ YL +++HRDL N+L+ +n ++ KiaDFG ++ l+
pF1KB2260 711 AQIASGMRYLATLNFVHRDLATRNCLVGENFTI----KIADFGMSRNLYa 756
t.sss.lttfvGTpwYmAPEvllggngygtkvDvWSlGvilye..lltGk
+ ++ v +++mA E +l + +t++DvW++Gv+l+e +l++
pF1KB2260 757 GdYYRvQGRAVLPIRWMAWECIL-MGKFTTASDVWAFGVTLWEvlMLCRA 805
pPFsgevq.ds.ldqlqlirkilgpplefdspewdsisrsefrrlpnlse
PF + +++ + ++++ g+++ ++p ++ +
pF1KB2260 806 QPFGQL-TdEQvIENAGEFFRDQGRQVYLSRPPACP-------------Q 841
eakdLikkcLnkDPskRlt........aeeilqHPwf<-*
+ +L+ +c+ + ++R+ ++ ++ ae++l+ +
pF1KB2260 842 GLYELMLRCWSRESEQRPPfsqlhrflAEDALNT--V 876
PF00069.15.ls: domain 1 of 1, from 573 to 876: score 129.2, E = 1e-35
*->yelleklGsGsfGtVykakhkgtgk................iVAvKi
++++eklG+G fG+V ++ + ++ + + + + +++++ +VAvKi
pF1KB2260 573 LRFKEKLGEGQFGEVHLCEVDSPQDlvsldfplnvrkghplLVAVKI 619
ikkrkekskkdktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEy
++ + +k +++++ E++i+ rL+ pNI+rl++v+ +d l+++++y
pF1KB2260 620 LRPDATKN--ARNDFLK-EVKIMSRLKDPNIIRLLGVCVQDDPLCMITDY 666
cegGLrvldLfdyls..............e..trrkgpllfsedeakkia
+e+G dL +ls ++ +++ ++ ++++++ ++ ++ s+ + ++a
pF1KB2260 667 MENG----DLNQFLSahqledkaaegapgDgqAAQGPTI--SYPMLLHVA 710
lQilrgleYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.
Qi++g+ YL +++HRDL N+L+ +n ++ KiaDFG ++ l+
pF1KB2260 711 AQIASGMRYLATLNFVHRDLATRNCLVGENFTI----KIADFGMSRNLYa 756
t.sss.lttfvGTpwYmAPEvllggngygtkvDvWSlGvilye..lltGk
+ ++ v +++mA E +l + +t++DvW++Gv+l+e +l++
pF1KB2260 757 GdYYRvQGRAVLPIRWMAWECIL-MGKFTTASDVWAFGVTLWEvlMLCRA 805
pPFsgevq.ds.ldqlqlirkilgpplefdspewdsisrsefrrlpnlse
PF + +++ + ++++ g+++ ++p ++ +
pF1KB2260 806 QPFGQL-TdEQvIENAGEFFRDQGRQVYLSRPPACP-------------Q 841
eakdLikkcLnkDPskRlt........aeeilqHPwf<-*
+ +L+ +c+ + ++R+ ++ ++ ae++l+ +
pF1KB2260 842 GLYELMLRCWSRESEQRPPfsqlhrflAEDALNT--V 876
PF07714.7.ls: domain 1 of 1, from 573 to 868: score 416.2, E = 4.3e-122
*->lklgkkLGeGaFGeVykGtlkg............sgdgteikVAVKt
l++ +kLGeG+FGeV++++ + +++ + + + + +g+ + VAVK+
pF1KB2260 573 LRFKEKLGEGQFGEVHLCEVDSpqdlvsldfplnVRKGHPLLVAVKI 619
LkeigaseeeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpgl
L++ +a+ + r dFl+E++iM++l + pNi+rLlGvc++ ++P l
pF1KB2260 620 LRP-DATKNA--RNDFLKEVKIMSRL-KDPNIIRLLGVCVQ-DDP----L 660
yiVtEymegGdLldfLrkhr................egrpLtlkdLlsfa
+++t yme+GdL fL +h +++ ++ +++++ +g+ ++ ++Ll+ a
pF1KB2260 661 CMITDYMENGDLNQFLSAHQledkaaegapgdgqaaQGPTISYPMLLHVA 710
lQiAkGMeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyY
+QiA+GM YL+ nfvHRDLA+RNcLV+en+++KI+DFG++R +y dyY
pF1KB2260 711 AQIASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYY 760
vrkkgggklPvkWmAPEslkygkFtskSDVWSFGVlLWEiftlGe.qPFY
r++g + lP++WmA E++ gkFt++SDVW+FGV+LWE++ l++ qP +
pF1KB2260 761 -RVQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEVLMLCRaQP-F 808
pgmsneevlellyedGyR.......LprPenCPdelYdlMlqCWaedPed
+++e+v+e + R+++++ L rP+ CP+ lY+lMl+CW ++ e+
pF1KB2260 809 GQLTDEQVIENA-GEFFRdqgrqvyLSRPPACPQGLYELMLRCWSRESEQ 857
RPtFselveeL<-*
RP Fs+l+++L
pF1KB2260 858 RPPFSQLHRFL 868
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