hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-18180569/chunk_1/iprscan-20080305-18180569.nocrc
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Query sequence: pF1KB5324
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    345.0   1.4e-114   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    346.8   3.2e-101   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      42   418 ..     1   272 []   345.0 1.4e-114
PF00001.12.ls   1/1      42   418 ..     1   272 []   346.8 3.2e-101

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 42 to 418: score 345.0, E = 1.4e-114
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GNlLV++ +  +  l+t+ n+f+l+LA ADL ++++ +   ++yl++
   pF1KB5324    42    GNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLM 88   

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                   g +W +G++ C+l+ ald+v++ aS+++L++IS+DRY ++++Pl+yr++r
   pF1KB5324    89 G-HWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKR 137  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   t prrA+++i+l+W+++++l+ P +lf w+++v e+++   + +C+i f 
   pF1KB5324   138 T-PRRAALMIGLAWLVSFVLWAPAILF-WQYLVGERTVL--AGQCYIQFL 183  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                   +++         ++++   + +F+lP++v++++Y+rI+r+  +rar++a+
   pF1KB5324   184 SQP---------IITFGTAMAAFYLPVTVMCTLYWRIYRETENRARELAA 224  

                   ..................................................
                    ++++++++++++++++++++++ ++++++++++  +  + ++  +  + 
   pF1KB5324   225 lqgsetpgkgggsssssersqpgaegspetppgrccrccraprllqaysw 274  

                   ..................................................
                   ++++++++++ ++ +++++++++++   + +  +++ + +++++++++++
   pF1KB5324   275 keeeeedegsmesltssegeepgsevvikmpmvdpeaqaptkqpprsspn 324  

                   .............................kkrsskerkaaktllvvvvvF
                   + ++++++++++ +++++++++++  ++++ +  ke+kaa+tl +++++F
   pF1KB5324   325 tvkrptkkgrdragkgqkprgkeqlakrkTFSLVKEKKAARTLSAILLAF 374  

                   vlCWlPyfivllldtlc.lsiimsssCelervlptallvtlwLayvNscl
                   +l W+Py+i++l+ t+c+++           v++t++ + +wL+yvNs++
   pF1KB5324   375 ILTWTPYNIMVLVSTFCkDC-----------VPETLWELGYWLCYVNSTI 413  

                   NPiIY<-*
                   NP+ Y   
   pF1KB5324   414 NPMCY    418  

PF00001.12.ls: domain 1 of 1, from 42 to 418: score 346.8, E = 3.2e-101
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GNlLV++ +  +  l+t+ n+f+l+LA ADL ++++ +   ++yl++
   pF1KB5324    42    GNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLM 88   

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                   g +W +G++ C+l+ ald+v++ aS+++L++IS+DRY ++++Pl+yr++r
   pF1KB5324    89 G-HWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKR 137  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   t prrA+++i+l+W+++++l+ P +lf w+++v e+++   + +C+i f 
   pF1KB5324   138 T-PRRAALMIGLAWLVSFVLWAPAILF-WQYLVGERTVL--AGQCYIQFL 183  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                   +++         ++++   + +F+lP++v++++Y+rI+r+  +rar++a+
   pF1KB5324   184 SQP---------IITFGTAMAAFYLPVTVMCTLYWRIYRETENRARELAA 224  

                   ..................................................
                    ++++++++++++++++++++++ ++++++++++  +  + ++  +  + 
   pF1KB5324   225 lqgsetpgkgggsssssersqpgaegspetppgrccrccraprllqaysw 274  

                   ..................................................
                   ++++++++++ ++ +++++++++++   + +  +++ + +++++++++++
   pF1KB5324   275 keeeeedegsmesltssegeepgsevvikmpmvdpeaqaptkqpprsspn 324  

                   .............................kkrsskerkaaktllvvvvvF
                   + ++++++++++ +++++++++++  ++++ +  ke+kaa+tl +++++F
   pF1KB5324   325 tvkrptkkgrdragkgqkprgkeqlakrkTFSLVKEKKAARTLSAILLAF 374  

                   vlCWlPyfivllldtlc.lsiimsssCelervlptallvtlwLayvNscl
                   +l W+Py+i++l+ t+c+++           v++t++ + +wL+yvNs++
   pF1KB5324   375 ILTWTPYNIMVLVSTFCkDC-----------VPETLWELGYWLCYVNSTI 413  

                   NPiIY<-*
                   NP+ Y   
   pF1KB5324   414 NPMCY    418  

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