hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-09240590/chunk_1/iprscan-20080306-09240590.nocrc
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Query sequence: pF1KA1531
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             50.7    4.6e-12   4
PF00560.23.fs Leucine Rich Repeat                             43.2    9.1e-11   4
PF02793.12.fs Hormone receptor domain                         18.7    0.00021   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   1/4      85   107 ..     1    24 []     8.2      7.6
PF00560.23.fs   2/4     109   131 ..     1    24 []    11.5    0.042
PF00560.23.ls   2/4     109   131 ..     1    24 []    13.4     0.77
PF00560.23.fs   3/4     133   155 ..     1    24 []    14.8   0.0055
PF00560.23.ls   3/4     133   155 ..     1    24 []    16.6    0.082
PF00560.23.ls   4/4     157   179 ..     1    24 []    12.4      1.3
PF02793.12.fs   1/1     367   421 ..    14    78 .]    18.7  0.00021

Alignments of top-scoring domains:
PF00560.23.ls: domain 1 of 4, from 85 to 107: score 8.2, E = 7.6
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                         +L Ls+ N ++t  l ++++ +l   
   pF1KA1531    85    GTVTLLLSN-N-KIT-GLRNGsFlGL    107  

PF00560.23.fs: domain 2 of 4, from 109 to 131: score 11.5, E = 0.042
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       Le+LdL++ N  ++ +++++++ +l   
   pF1KA1531   109    LLEKLDLRN-N-IIS-TVQPGaFlGL    131  

PF00560.23.ls: domain 2 of 4, from 109 to 131: score 13.4, E = 0.77
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       Le+LdL++ N  ++ +++++++ +l   
   pF1KA1531   109    LLEKLDLRN-N-IIS-TVQPGaFlGL    131  

PF00560.23.fs: domain 3 of 4, from 133 to 155: score 14.8, E = 0.0055
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L+ LdLs+ N ++ g l s+++++l   
   pF1KA1531   133    ELKRLDLSN-N-RI-GCLTSEtFqGL    155  

PF00560.23.ls: domain 3 of 4, from 133 to 155: score 16.6, E = 0.082
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L+ LdLs+ N ++ g l s+++++l   
   pF1KA1531   133    ELKRLDLSN-N-RI-GCLTSEtFqGL    155  

PF00560.23.ls: domain 4 of 4, from 157 to 179: score 12.4, E = 1.3
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L  L++sg N  ++ sl+++ ++ l   
   pF1KA1531   157    RLLRLNISG-N-IFS-SLQPGvFdEL    179  

PF02793.12.fs: domain 1 of 1, from 367 to 421: score 18.7, E = 0.00021
                   *->WPrtpaGqlvvvpCPdyfsgfnydttgdfss.........gnayRnC
                      WPrt aG ++ ++C  y           f+s + +++ ++  a+R+C
   pF1KA1531   367    WPRTLAGITAYQSCLQYP----------FTSvplgggapgTRASRRC 403  

                   lenGwwerhpnsnwpwpnysaCtspey<-*
                   +  G+we        + +ys+C  +++   
   pF1KA1531   404 DRAGRWE--------PGDYSHC-LYTN    421  

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