hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-17384170/chunk_1/iprscan-20080305-17384170.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pF1KSDA0638
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       70.1      7e-21   1
PF00169.19.ls PH domain                                       72.1    1.6e-18   1
PF00498.16.fs FHA domain                                      47.6    1.8e-13   1
PF00498.16.ls FHA domain                                      49.3    1.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00498.16.fs   1/1      64   125 ..     1    94 []    47.6  1.8e-13
PF00498.16.ls   1/1      64   125 ..     1    94 []    49.3  1.2e-11
PF00169.19.fs   1/1    1257  1370 ..     1    92 []    70.1    7e-21
PF00169.19.ls   1/1    1257  1370 ..     1    92 []    72.1  1.6e-18

Alignments of top-scoring domains:
PF00498.16.fs: domain 1 of 1, from 64 to 125: score 47.6, E = 1.8e-13
                   *->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr
                      ++iG+  ++ di+l+ +      g ++++H+ ie+  g+        
  pF1KSDA063    64    TVIGS--AARDISLQGP------G-LAPEHCYIENLRGTL------- 94   

                   paqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-*
                            +l+++++++      ++g ++   +p+rL++G++++lG   
  pF1KSDA063    95 ---------TLYPCGNAC-----TIDGLPV--RQPTRLTQGCMLCLG    125  

PF00498.16.ls: domain 1 of 1, from 64 to 125: score 49.3, E = 1.2e-11
                   *->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr
                      ++iG+  ++ di+l+ +      g ++++H+ ie+  g+        
  pF1KSDA063    64    TVIGS--AARDISLQGP------G-LAPEHCYIENLRGTL------- 94   

                   paqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-*
                            +l+++++++      ++g ++   +p+rL++G++++lG   
  pF1KSDA063    95 ---------TLYPCGNAC-----TIDGLPV--RQPTRLTQGCMLCLG    125  

PF00169.19.fs: domain 1 of 1, from 1257 to 1370: score 70.1, E = 7e-21
                   *->vikeGwLlkkg.gkkswkkRyfvLfd..dvLlyykdkk.kkpkgsip
                       +++G+L k+g+++kswkkR+fv+ + +++L+yy dk++ k+kg+i 
  pF1KSDA063  1257    KVCRGYLVKMGgKIKSWKKRWFVFDRlkRTLSYYVDKHeTKLKGVIY 1303 

                   Lsgi.qvtkvpdn.................krkncFeirt.dretlllqa
                    + i++v+++   +  +++  + +  +++++   +F+++t+dr  ++  a
  pF1KSDA063  1304 FQAIeEVYYDHLRsaakkrffrftmvtespNPALTFCVKThDR-LYYMVA 1352 

                   eseeerkeWvkaiqsair<-*
                   +s+e ++ W++ i   +    
  pF1KSDA063  1353 PSAEAMRIWMDVIVTGAE    1370 

PF00169.19.ls: domain 1 of 1, from 1257 to 1370: score 72.1, E = 1.6e-18
                   *->vikeGwLlkkg.gkkswkkRyfvLfd..dvLlyykdkk.kkpkgsip
                       +++G+L k+g+++kswkkR+fv+ + +++L+yy dk++ k+kg+i 
  pF1KSDA063  1257    KVCRGYLVKMGgKIKSWKKRWFVFDRlkRTLSYYVDKHeTKLKGVIY 1303 

                   Lsgi.qvtkvpdn.................krkncFeirt.dretlllqa
                    + i++v+++   +  +++  + +  +++++   +F+++t+dr  ++  a
  pF1KSDA063  1304 FQAIeEVYYDHLRsaakkrffrftmvtespNPALTFCVKThDR-LYYMVA 1352 

                   eseeerkeWvkaiqsair<-*
                   +s+e ++ W++ i   +    
  pF1KSDA063  1353 PSAEAMRIWMDVIVTGAE    1370 

//