hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20090918/iprscan-20090918-19445928/chunk_1/iprscan-20090918-19445928.nocrc
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Query sequence: pF1KA1273
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00004.19.fs ATPase family associated with various cellul   115.7    8.9e-35   1
PF00004.19.ls ATPase family associated with various cellul   117.7    3.1e-32   1
PF07726.2.fs ATPase family associated with various cellul    20.6    6.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07726.2.fs   1/1     301   328 ..     1    28 [.    20.6  6.1e-06
PF00004.19.fs   1/1     301   497 ..     1   215 []   115.7  8.9e-35
PF00004.19.ls   1/1     301   497 ..     1   215 []   117.7  3.1e-32

Alignments of top-scoring domains:
PF07726.2.fs: domain 1 of 1, from 301 to 328: score 20.6, E = 6.1e-06
                   *->HvLlegvPGlaKTllvkalAkaldlkfk<-*
                      H+Ll g PG++KTl++k+lA + +++++   
   pF1KA1273   301    HILLYGPPGTGKTLFAKKLALHSGMDYA    328  

PF00004.19.fs: domain 1 of 1, from 301 to 497: score 115.7, E = 8.9e-35
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv
                      ++LLyGPPGtGKTl Ak +A ++g  +  + g  +v+    e++++ 
   pF1KA1273   301    HILLYGPPGTGKTLFAKKLALHSGMDYAIMTG-GDVAPMGREGVTAM 346  

                   ralfelArkslkaaPspiiFIDEiDalapkRgd..egdvssrvvnqLlte
                   ++lf+ A  s  + +   +F+DE+Da+ +kR  ++ + + ++++n++l  
   pF1KA1273   347 HKLFDWANTS--RRGL-LLFMDEADAFLRKRATeeISKDLRATLNAFLYH 393  

                   mDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrri
                   m        +h          +++++++a+N p++ D A+ +  R+d+ +
   pF1KA1273   394 M-------GQH---------SNKFMLVLASNLPEQFDCAINS--RIDVMV 425  

                   evplPdeeeRleIlkihlkkmplalcqer.selakdvdldelak.e.lAr
                   +++lP  eeR++  + h+++  l  +  ++  ++k   +d+  k +++Ar
   pF1KA1273   426 HFDLPQQEERERLVRLHFDNCVLKPA-TEgKRRLKLAQFDYGRKcSeVAR 474  

                   rtpgfsgadlaalcreAalralr<-*
                   +t+g+sg+++a+l+   +  a     
   pF1KA1273   475 LTEGMSGREIAQLAVSWQATAYA    497  

PF00004.19.ls: domain 1 of 1, from 301 to 497: score 117.7, E = 3.1e-32
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv
                      ++LLyGPPGtGKTl Ak +A ++g  +  + g  +v+    e++++ 
   pF1KA1273   301    HILLYGPPGTGKTLFAKKLALHSGMDYAIMTG-GDVAPMGREGVTAM 346  

                   ralfelArkslkaaPspiiFIDEiDalapkRgd..egdvssrvvnqLlte
                   ++lf+ A  s  + +   +F+DE+Da+ +kR  ++ + + ++++n++l  
   pF1KA1273   347 HKLFDWANTS--RRGL-LLFMDEADAFLRKRATeeISKDLRATLNAFLYH 393  

                   mDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrri
                   m        +h          +++++++a+N p++ D A+ +  R+d+ +
   pF1KA1273   394 M-------GQH---------SNKFMLVLASNLPEQFDCAINS--RIDVMV 425  

                   evplPdeeeRleIlkihlkkmplalcqer.selakdvdldelak.e.lAr
                   +++lP  eeR++  + h+++  l  +  ++  ++k   +d+  k +++Ar
   pF1KA1273   426 HFDLPQQEERERLVRLHFDNCVLKPA-TEgKRRLKLAQFDYGRKcSeVAR 474  

                   rtpgfsgadlaalcreAalralr<-*
                   +t+g+sg+++a+l+   +  a     
   pF1KA1273   475 LTEGMSGREIAQLAVSWQATAYA    497  

//