hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-23100409/chunk_1/iprscan-20080305-23100409.nocrc
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Query sequence: pF1KA1116
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     41.5    7.1e-11   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     43.3    7.4e-10   1
PF04818.4.ls Protein of unknown function, DUF618              9.4     0.0006   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04818.4.ls   1/1      56   124 ..     1    71 []     9.4   0.0006
PF00076.12.fs   1/1     479   546 ..     1    74 []    41.5  7.1e-11
PF00076.12.ls   1/1     479   546 ..     1    74 []    43.3  7.4e-10

Alignments of top-scoring domains:
PF04818.4.ls: domain 1 of 1, from 56 to 124: score 9.4, E = 0.0006
                   *->snnRkKLvNlLYLANDVvQnSKvrKgpE..TFvdeFspvlveAfahi
                      ++   K++ +LY+   +v +S+ + g E++ F + Fs+ + + f   
   pF1KA1116    56    PE--YKVP-GLYVIDSIVRQSRHQFGQEkdVFAPRFSNNIISTFQNL 99   

                   ieegddkvKkklkRvinIWkeRnvFs<-*
                   + +++ + K+k+ Rv+n W+  nvF    
   pF1KA1116   100 Y-RCPGDDKSKIVRVLNLWQKNNVFK    124  

PF00076.12.fs: domain 1 of 1, from 479 to 546: score 41.5, E = 7.1e-11
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+Vg   + +t++dL  lF++fG+iesi++++        ++G+a+V
   pF1KA1116   479    LWVGQVDKKATQQDLTNLFEEFGQIESINMIP--------PRGCAYV 517  

                   eFedeedAekAldalnG..kelggrelrv<-*
                    +    dA +Al++l  +++++g++++++   
   pF1KA1116   518 CMVHRQDAFRALQKLSSgsYKIGSKVIKI    546  

PF00076.12.ls: domain 1 of 1, from 479 to 546: score 43.3, E = 7.4e-10
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+Vg   + +t++dL  lF++fG+iesi++++        ++G+a+V
   pF1KA1116   479    LWVGQVDKKATQQDLTNLFEEFGQIESINMIP--------PRGCAYV 517  

                   eFedeedAekAldalnG..kelggrelrv<-*
                    +    dA +Al++l  +++++g++++++   
   pF1KA1116   518 CMVHRQDAFRALQKLSSgsYKIGSKVIKI    546  

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