hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-05334022/chunk_1/iprscan-20080305-05334022.nocrc
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Query sequence: pF1KA0473
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00226.21.fs DnaJ domain                                     23.4    2.3e-06   1
PF00226.21.ls DnaJ domain                                      0.2     0.0039   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00226.21.ls   1/1     855   913 .]     1    76 []     0.2   0.0039
PF00226.21.fs   1/1     861   902 ..    13    64 ..    23.4  2.3e-06

Alignments of top-scoring domains:
PF00226.21.ls: domain 1 of 1, from 855 to 913: score 0.2, E = 0.0039
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae
                            G     + e++KK YRk +l +HPDK  g p      e   
   pF1KA0473   855    ------GMADLVTPEQVKKVYRKAVLVVHPDKATGQP-----YEQY- 889  

                   skeeAeekFkeineAYevLSDpekRaiYD<-*
                       A+  F+e+n A++   +  ++ +Y    
   pF1KA0473   890 ----AKMIFMELNDAWSEFENQGQKPLY-    913  

PF00226.21.fs: domain 1 of 1, from 861 to 902: score 23.4, E = 2.3e-06
                   *->sdeeIKKAYRkLAlkyHPDKNpgdpeerktneraeskeeAeekFkei
                      + e++KK YRk +l +HPDK  g p      e       A+  F+e+
   pF1KA0473   861    TPEQVKKVYRKAVLVVHPDKATGQP-----YEQY-----AKMIFMEL 897  

                   neAYe<-*
                   n A++   
   pF1KA0473   898 NDAWS    902  

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