hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080304/iprscan-20080304-16090084/chunk_1/iprscan-20080304-16090084.nocrc
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Query sequence: pF1KA0001
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    125.3    8.1e-42   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    127.9    2.7e-35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.ls   1/1      39   295 ..     1   272 []   127.9  2.7e-35
PF00001.12.fs   1/1      45   295 ..     7   272 .]   125.3  8.1e-42

Alignments of top-scoring domains:
PF00001.12.ls: domain 1 of 1, from 39 to 295: score 127.9, E = 2.7e-35
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                       N++  +++++  + + ++ i++ N  +AD+ ++lt p+ +l  +  
   pF1KA0001    39    LNGVSGWIFFYVPSSK-SFIIYLKNIVIADFVMSLTFPFKILGDSGL 84   

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                   g  W++  ++C+++  l++vnmy+Si +  +IS+DRY  Iv+Pl+++ ++
   pF1KA0001    85 G-PWQLNVFVCRVSAVLFYVNMYVSIVFFGLISFDRYYKIVKPLWTSFIQ 133  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   + +   k+++++vW l lll++P ++++++   e +     +  C +   
   pF1KA0001   134 S-VSYSKLLSVIVWMLMLLLAVPNIILTNQSVREVT-----QIKCIELKS 177  

                   evstasvktwlvsyal...lstlvgFvlPllvilvcYtrIlrtlrkrark
                   e          + ++  ++++++  F + +l+++v+Yt I ++++k+  k
   pF1KA0001   178 ELG--------RKWHKasnYIFVAIFWIVFLLLIVFYTAITKKIFKSHLK 219  

                   gaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsss
                      + + s ++k  + ++ +v+vF++C++Py+i+ +  t  ++  +  +s
   pF1KA0001   220 SS-RNSTSVKKKSSRNIFSIVFVFFVCFVPYHIARIPYTKSqTEAH--YS 266  

                   CelervlptallvtlwLayvNsclNPiIY<-*
                   C+++++l++++ +tl+L+ +N cl+PiIY   
   pF1KA0001   267 CQSKEILRYMKEFTLLLSAANVCLDPIIY    295  

PF00001.12.fs: domain 1 of 1, from 45 to 295: score 125.3, E = 8.1e-42
                   *->lvilrtkklrtptnifilNLAvADLLflltlppwalyylvggedWpf
                      +++++  + + ++ i++ N  +AD+ ++lt p+ +l  +  g  W++
   pF1KA0001    45    WIFFYVPSSK-SFIIYLKNIVIADFVMSLTFPFKILGDSGLG-PWQL 89   

                   GsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrrtsprrA
                     ++C+++  l++vnmy+Si +  +IS+DRY  Iv+Pl+++ +++ +   
   pF1KA0001    90 NVFVCRVSAVLFYVNMYVSIVFFGLISFDRYYKIVKPLWTSFIQS-VSYS 138  

                   kvvillvWvlalllslPpllfswvktveegngvvnvttClidfpevstas
                   k+++++vW l lll++P ++++++   e +     +  C +   e     
   pF1KA0001   139 KLLSVIVWMLMLLLAVPNIILTNQSVREVT-----QIKCIELKSELG--- 180  

                   vktwlvsyal...lstlvgFvlPllvilvcYtrIlrtlrkrarkgaskkr
                        + ++  ++++++  F + +l+++v+Yt I ++++k+  k   + +
   pF1KA0001   181 -----RKWHKasnYIFVAIFWIVFLLLIVFYTAITKKIFKSHLKSS-RNS 224  

                   sskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCelerv
                    s ++k  + ++ +v+vF++C++Py+i+ +  t  ++  +  +sC+++++
   pF1KA0001   225 TSVKKKSSRNIFSIVFVFFVCFVPYHIARIPYTKSqTEAH--YSCQSKEI 272  

                   lptallvtlwLayvNsclNPiIY<-*
                   l++++ +tl+L+ +N cl+PiIY   
   pF1KA0001   273 LRYMKEFTLLLSAANVCLDPIIY    295  

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