LHX1 ORF clone FHC02613

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC02613

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Clone info.

Species

human

Clone Name

pFN21AB8143 Sequence (with vector) Restriction Map

Product ID

FHC02613

Flexi Clone PID

FXC02613

Original Clone PID

ORK02613

ORF Sequence

DNA sequence (1218 bp)
Protein sequence (406 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463836]

Gene

KIBB8143

Symbol

LHX1

Alias : LIM-1, LIM1

Description

LIM homeobox 1

Original Clone ID

cp00503

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1218 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 406 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS11316.1 4.6e-82 100.0 LHX1 CCDS9171.1 1.6e-59 74.6 LHX5 CCDS1338.1 7e-12 37.0 LHX4 CCDS6994.1 2.9e-11 39.5 LHX3 CCDS6995.1 2.9e-11 39.5 LHX3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001781 4 59 PF00412 Zinc finger IPR001781 63 120 PF00412 Zinc finger IPR001356 181 237 PF00046 Homeobox HMMSmart IPR001781 3 54 SM00132 Zinc finger IPR001781 62 117 SM00132 Zinc finger IPR001356 180 242 SM00389 Homeobox ProfileScan IPR001781 2 61 PS50023 Zinc finger IPR001781 62 124 PS50023 Zinc finger IPR001356 178 238 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005559 406 601999 100.0 100.0 NP_071758 402 605992 74.6 100.0 NP_203129 390 262700,602146 37.0 97.5 XP_016870657 373 221750,600577 39.5 97.8 XP_005263467 386 221750,600577 39.5 97.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB8143 Download

>KIBB8143  1218 bp
ATGGTTCACTGTGCCGGCTGCAAAAGGCCCATCCTGGACCGCTTTCTCTTGAACGTGCTG
GACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAG
AAGTGCTTCTCCAGGGAAGGCAAACTCTACTGCAAGAACGACTTCTTCCGGTGTTTCGGT
ACCAAATGCGCAGGCTGCGCTCAGGGCATCTCCCCTAGCGACCTGGTGCGGAGAGCGCGG
AGCAAAGTGTTTCACCTGAACTGCTTCACCTGCATGATGTGTAACAAGCAGCTCTCCACT
GGCGAGGAACTCTACATCATCGACGAGAATAAGTTCGTCTGCAAAGAGGATTACCTAAGT
AACAGCAGTGTTGCCAAAGAGAACAGCCTTCACTCGGCCACCACGGGCAGTGACCCCAGT
TTGTCTCCGGATTCCCAAGACCCGTCGCAGGACGACGCCAAGGACTCGGAGAGCGCCAAC
GTGTCGGACAAGGAAGCGGGTAGCAACGAGAATGACGACCAGAACCTGGGCGCCAAGCGG
CGGGGACCGCGCACCACCATCAAAGCCAAGCAGCTGGAGACGCTGAAGGCCGCCTTCGCT
GCTACACCCAAGCCCACCCGCCACATCCGCGAGCAGCTGGCGCAGGAGACCGGCCTCAAC
ATGCGCGTCATTCAGGTCTGGTTCCAGAACCGGCGCTCCAAGGAGCGGAGGATGAAGCAG
CTGAGCGCCCTGGGCGCCCGGCGCCACGCCTTCTTCCGCAGTCCGCGCCGGATGCGGCCG
CTGGTGGACCGCCTGGAGCCGGGCGAGCTCATCCCCAATGGTCCCTTCTCCTTCTACGGA
GATTACCAGAGCGAGTACTACGGGCCCGGGGGCAACTACGACTTCTTCCCGCAAGGCCCC
CCGTCCTCGCAGGCCCAGACACCAGTGGACCTACCCTTCGTGCCGTCATCTGGGCCGTCC
GGGACGCCCCTGGGTGGCCTGGAGCACCCGCTGCCGGGCCACCACCCGTCGAGCGAGGCG
CAGCGGTTTACCGACATCCTGGCGCACCCACCCGGGGACTCGCCCAGCCCCGAGCCCAGC
CTGCCCGGGCCTCTGCACTCCATGTCGGCCGAGGTCTTCGGACCCAGCCCGCCCTTCTCG
TCGCTGTCGGTCAACGGTGGGGCGAGCTACGGAAACCACCTGTCCCACCCCCCCGAAATG
AACGAGGCGGCCGTGTGG

ORF Protein

Cloned ORF protein sequence for pFN21AB8143 Download

>KIBB8143  406 aa
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG
TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS
NSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR
RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
LSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGP
PSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPS
LPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB8143 Download

>pFN21AB8143  5923 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGTTCACTGTGCCGGCTGCAAAAGGCCCATCCT
GGACCGCTTTCTCTTGAACGTGCTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTG
TGAATGTAAATGCAACCTGACCGAGAAGTGCTTCTCCAGGGAAGGCAAACTCTACTGCAA
GAACGACTTCTTCCGGTGTTTCGGTACCAAATGCGCAGGCTGCGCTCAGGGCATCTCCCC
TAGCGACCTGGTGCGGAGAGCGCGGAGCAAAGTGTTTCACCTGAACTGCTTCACCTGCAT
GATGTGTAACAAGCAGCTCTCCACTGGCGAGGAACTCTACATCATCGACGAGAATAAGTT
CGTCTGCAAAGAGGATTACCTAAGTAACAGCAGTGTTGCCAAAGAGAACAGCCTTCACTC
GGCCACCACGGGCAGTGACCCCAGTTTGTCTCCGGATTCCCAAGACCCGTCGCAGGACGA
CGCCAAGGACTCGGAGAGCGCCAACGTGTCGGACAAGGAAGCGGGTAGCAACGAGAATGA
CGACCAGAACCTGGGCGCCAAGCGGCGGGGACCGCGCACCACCATCAAAGCCAAGCAGCT
GGAGACGCTGAAGGCCGCCTTCGCTGCTACACCCAAGCCCACCCGCCACATCCGCGAGCA
GCTGGCGCAGGAGACCGGCCTCAACATGCGCGTCATTCAGGTCTGGTTCCAGAACCGGCG
CTCCAAGGAGCGGAGGATGAAGCAGCTGAGCGCCCTGGGCGCCCGGCGCCACGCCTTCTT
CCGCAGTCCGCGCCGGATGCGGCCGCTGGTGGACCGCCTGGAGCCGGGCGAGCTCATCCC
CAATGGTCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGGCCCGGGGGCAA
CTACGACTTCTTCCCGCAAGGCCCCCCGTCCTCGCAGGCCCAGACACCAGTGGACCTACC
CTTCGTGCCGTCATCTGGGCCGTCCGGGACGCCCCTGGGTGGCCTGGAGCACCCGCTGCC
GGGCCACCACCCGTCGAGCGAGGCGCAGCGGTTTACCGACATCCTGGCGCACCCACCCGG
GGACTCGCCCAGCCCCGAGCCCAGCCTGCCCGGGCCTCTGCACTCCATGTCGGCCGAGGT
CTTCGGACCCAGCCCGCCCTTCTCGTCGCTGTCGGTCAACGGTGGGGCGAGCTACGGAAA
CCACCTGTCCCACCCCCCCGAAATGAACGAGGCGGCCGTGTGGGTTTAAACGAATTCGGG
CTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTA
ACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAAC
CCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACC
ACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTA
TTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATG
TTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGT
GGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCC
CAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATG
GTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTA
TTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTT
CAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCC
TTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAA
GATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGT
AAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTT
CTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGC
ATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACG
GATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCG
GCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAAC
ATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCA
AACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTA
ACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGAT
AAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAA
TCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAG
CCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAAT
AGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGAC
CAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAAT
CAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTA
AAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAA
ATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTC
CCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGT
CCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCA
GTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCG
ACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTAT
CGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTA
CAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCT
GCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAAC
AAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAA
AAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAA
ACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTT
TATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCAT
GAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCA
TAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTG
TTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACA
ATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGC
AGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT