Gene/Protein Characteristic Table for
FHC02287
Species
human
Product ID
FHC02287
Linker Type
Cloning Site
SgfI-PmeI
Gene
KIBB7154
Description
N-formyl peptide receptor 3
Original Clone ID
cp01159
Characterization of the cloned ORF
N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand
-
Length: 1059 bp
Restriction map A
Restriction map B
-
Length: 353 aa
Result of homology search against nr database (
FASTA output,
Multiple alignment)
Entry Exp ID% Protein Source P25089 3.7e-146 100.0 N-formyl peptid... Homo sapiens XP_524363 2.7e-145 99.4 formyl peptide ... Pan troglodytes AAA58482 7.8e-145 99.1 FMLP-related re... Homo sapiens P79243 7.5e-143 98.8 N-formyl peptid... Pan troglodytes P79178 7.2e-141 97.4 N-formyl peptid... Gorilla gorilla...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ]
Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR000276 28 52 PR00237 Rhodopsin-like GPCR superfamily IPR000826 52 65 PR00526 Formyl/methionyl peptide receptor IPR000276 60 81 PR00237 Rhodopsin-like GPCR superfamily IPR000826 72 88 PR00526 Formyl/methionyl peptide receptor IPR000826 99 116 PR00526 Formyl/methionyl peptide receptor IPR000276 105 127 PR00237 Rhodopsin-like GPCR superfamily IPR000826 124 140 PR00526 Formyl/methionyl peptide receptor IPR000276 141 162 PR00237 Rhodopsin-like GPCR superfamily IPR000826 176 190 PR00526 Formyl/methionyl peptide receptor IPR000826 199 212 PR00526 Formyl/methionyl peptide receptor IPR000276 202 225 PR00237 Rhodopsin-like GPCR superfamily IPR000826 224 241 PR00526 Formyl/methionyl peptide receptor IPR000276 239 263 PR00237 Rhodopsin-like GPCR superfamily IPR000276 284 310 PR00237 Rhodopsin-like GPCR superfamily IPR000826 306 325 PR00526 Formyl/methionyl peptide receptor HMMPfam IPR000276 43 302 PF00001 Rhodopsin-like GPCR superfamily ProfileScan IPR000276 43 302 PS50262 Rhodopsin-like GPCR superfamily ScanRegExp IPR000276 111 127 PS00237 Rhodopsin-like GPCR superfamily
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 27 IFSLLVHGVTFVFGVLGNGLVIW 49 PRIMARY 23 2 63 CYLNLALADFSFSAILPFRMVSV 85 SECONDARY 23 3 101 VHVMIDINLFVSVYLITIIALDR 123 PRIMARY 23 4 146 MTGLWIFTIVLTLPNFIFWTTIS 168 PRIMARY 23 5 205 HFIIGFSVPMSIITVCYGIIAAK 227 PRIMARY 23 6 244 AAVVASFFICWFPYELIGILMAV 266 PRIMARY 23 7 282 VLINPTSSLAFFNSCLNPILYVF 304 SECONDARY 23
Result of homology search against disease genes in OMIM database
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_002021 353 136539 100.0 100.0 NP_001005738 351 136538 88.9 100.0 NP_001453 351 136538 88.9 100.0 NP_002020 350 136537 81.8 99.7 NP_004063 371 602351 69.5 89.8 Inquiries or Suggestions ?
Send a message to office AT kazusa.or.jp