Gene/Protein Characteristic Table for
FHC01931
Species
human
Product ID
FHC01931
Linker Type
Cloning Site
SgfI-PmeI
Gene
KIBB9522
Description
G protein-coupled receptor 56
Original Clone ID
cp00156
Characterization of the cloned ORF
N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand
-
Length: 2061 bp
Restriction map A
Restriction map B
-
Length: 687 aa
Result of homology search against nr database (
FASTA output,
Multiple alignment)
Entry Exp ID% Protein Source CAB37294 0 99.7 TM7XN1 protein ... Homo sapiens EAW82939 0 99.7 G protein-coupl... Homo sapiens Q9Y653 0 98.8 G-protein coupl... Homo sapiens AAD30545 0 98.7 G-protein-coupl... Homo sapiens AAH08770 0 98.7 G protein-coupl... Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR003910 85 100 PR01422 GPR56 orphan receptor IPR003910 320 336 PR01422 GPR56 orphan receptor IPR003910 338 351 PR01422 GPR56 orphan receptor IPR000832 405 429 PR00249 GPCR IPR000832 438 462 PR00249 GPCR IPR000832 471 494 PR00249 GPCR IPR003910 495 509 PR01422 GPR56 orphan receptor IPR000832 510 535 PR00249 GPCR IPR003910 552 570 PR01422 GPR56 orphan receptor IPR000832 634 655 PR00249 GPCR HMMPfam IPR000203 342 389 PF01825 GPS IPR000832 400 652 PF00002 GPCR HMMSmart IPR000203 342 394 SM00303 GPS ProfileScan IPR000203 343 394 PS50221 GPS IPR000832 403 656 PS50261 GPCR ScanRegExp IPR000873 675 686 PS00455 AMP-dependent synthetase and ligase
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 4 QSLLQTTLFLLSLLFLVQGAHGR 26 SECONDARY 23 2 407 SYVGCVVSALACLVTIAAYLCS 428 PRIMARY 22 3 440 HMNLLLAVFLLDTSFLLSEPVAL 462 SECONDARY 23 4 471 ASAIFLHFSLLTCLSWTGLEGYN 493 SECONDARY 23 5 511 LKLSAMGWGFPIFLVTLVALVDV 533 PRIMARY 23 6 569 LGLFSLVFLFNMAMLATMVVQIL 591 PRIMARY 23 7 602 HVLTLLGLSLVLGLPWALIFFSF 624 PRIMARY 23 8 632 VVLYLFSIITSFQGFLIFIWYW 653 PRIMARY 22
Result of homology search against disease genes in OMIM database
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_958932 687 604110,606854 99.7 100.0 NP_958933 687 604110,606854 99.7 100.0 NP_005673 693 604110,606854 98.8 100.0 Inquiries or Suggestions ?
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