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SpecieshumanProduct IDFXC00664Cloning SiteSgfI-PmeISymbolSHOC2
Alias : NSLH1, SIAA0862, SOC2, SUR8DescriptionSHOC2 leucine-rich repeat scaffold protein, transcript variant 1
Length: 1746 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 582 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS7568.1 2e-166 99.8 SHOC2 CCDS58095.1 2.9e-96 91.9 SHOC2 CCDS55124.1 3e-25 30.2 LRRD1 CCDS46951.1 9.6e-23 29.3 LRRIQ4 CCDS4953.2 1.2e-18 31.1 LRRC1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 124 141 PF00560 Leucine-rich repeat IPR001611 147 168 PF00560 Leucine-rich repeat IPR001611 170 186 PF00560 Leucine-rich repeat IPR001611 193 214 PF00560 Leucine-rich repeat IPR001611 239 260 PF00560 Leucine-rich repeat IPR001611 309 330 PF00560 Leucine-rich repeat IPR001611 426 447 PF00560 Leucine-rich repeat IPR001611 449 468 PF00560 Leucine-rich repeat IPR001611 473 493 PF00560 Leucine-rich repeat IPR001611 518 537 PF00560 Leucine-rich repeat HMMSmart NULL 122 140 SM00365 NULL IPR003591 122 144 SM00369 Leucine-rich repeat NULL 122 141 SM00364 NULL IPR003591 145 167 SM00369 Leucine-rich repeat NULL 145 164 SM00364 NULL NULL 168 189 SM00365 NULL IPR003591 168 190 SM00369 Leucine-rich repeat NULL 168 187 SM00364 NULL NULL 191 216 SM00365 NULL IPR003591 191 213 SM00369 Leucine-rich repeat IPR003591 214 235 SM00369 Leucine-rich repeat NULL 214 233 SM00364 NULL NULL 237 268 SM00365 NULL IPR003591 237 260 SM00369 Leucine-rich repeat NULL 237 256 SM00364 NULL NULL 260 279 SM00364 NULL IPR003591 283 306 SM00369 Leucine-rich repeat NULL 283 302 SM00364 NULL NULL 306 325 SM00364 NULL IPR003591 307 329 SM00369 Leucine-rich repeat IPR003591 330 353 SM00369 Leucine-rich repeat IPR003591 354 377 SM00369 Leucine-rich repeat IPR003591 401 423 SM00369 Leucine-rich repeat IPR003591 424 446 SM00369 Leucine-rich repeat NULL 424 443 SM00364 NULL NULL 447 465 SM00365 NULL IPR003591 447 469 SM00369 Leucine-rich repeat NULL 447 466 SM00364 NULL IPR003591 470 492 SM00369 Leucine-rich repeat NULL 470 489 SM00364 NULL NULL 493 521 SM00365 NULL IPR003591 493 514 SM00369 Leucine-rich repeat NULL 493 512 SM00364 NULL IPR003591 516 540 SM00369 Leucine-rich repeat ProfileScan IPR001611 124 145 PS51450 Leucine-rich repeat IPR001611 147 169 PS51450 Leucine-rich repeat IPR001611 170 191 PS51450 Leucine-rich repeat IPR001611 193 214 PS51450 Leucine-rich repeat IPR001611 216 237 PS51450 Leucine-rich repeat IPR001611 239 260 PS51450 Leucine-rich repeat IPR001611 262 283 PS51450 Leucine-rich repeat IPR001611 285 307 PS51450 Leucine-rich repeat IPR001611 308 329 PS51450 Leucine-rich repeat IPR001611 356 377 PS51450 Leucine-rich repeat IPR001611 380 400 PS51450 Leucine-rich repeat IPR001611 403 424 PS51450 Leucine-rich repeat IPR001611 426 448 PS51450 Leucine-rich repeat IPR001611 449 470 PS51450 Leucine-rich repeat IPR001611 472 494 PS51450 Leucine-rich repeat IPR001611 495 516 PS51450 Leucine-rich repeat IPR001611 518 540 PS51450 Leucine-rich repeat
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_016872191 582 602775,607721 99.8 100.0 NP_031399 582 602775,607721 99.8 100.0 XP_016872193 582 602775,607721 99.8 100.0 NP_001311265 582 602775,607721 99.8 100.0 NP_001311266 582 602775,607721 99.8 100.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KSDA0862 Download>KIAA0862 1746 bp ATGAGTAGTAGTTTAGGAAAAGAAAAAGACTCTAAAGAAAAAGATCCCAAAGTACCATCA GCCAAGGAAAGAGAAAAGGAGGCAAAAGCCTCTGGAGGTTTTGGGAAAGAGAGCAAAGAA AAAGAACCTAAGACCAAAGGGAAAGATGCCAAAGATGGAAAGAAGGACTCCAGTGCTGCC CAACCAGGGGTGGCATTTTCAGTTGACAATACGATCAAACGGCCAAACCCAGCACCTGGG ACTAGAAAAAAATCCAGCAATGCAGAGGTGATTAAAGAGCTCAACAAATGCCGGGAAGAG AATTCAATGCGTTTGGACTTATCCAAGAGATCTATACACATATTGCCATCATCAATCAAA GAGTTGACTCAATTAACAGAACTTTATTTATACAGTAACAAATTGCAGTCCCTCCCAGCA GAGGTGGGATGTTTAGTAAATCTCATGACACTGGCTCTAAGTGAAAATTCACTTACCAGT TTGCCTGACTCTCTTGATAACTTGAAGAAGCTGCGGATGCTTGATTTACGGCATAATAAA CTGAGAGAAATTCCTTCAGTGGTGTATAGGCTGGATTCTCTCACCACTCTTTACCTTCGC TTTAATCGTATAACTACTGTGGAAAAGGACATCAAAAACTTGTCAAAACTCAGCATGCTT AGCATTCGAGAGAACAAAATTAAACAACTACCTGCTGAAATTGGTGAATTATGTAACCTC ATTACGCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGT ACACAGATAACCAACCTTGACTTGCAGCACAATGAACTGCTAGACCTCCCAGATACTATA GGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATATAACAGACTGTCAGCAATACCC AGATCATTAGCAAAATGCAGTGCACTTGAAGAATTAAATTTAGAGAACAATAACATTTCT ACTTTACCAGAGAGTCTTTTATCAAGTCTTGTGAAACTGAATAGTTTGACCTTAGCTAGA AATTGCTTCCAGTTGTATCCAGTGGGTGGTCCATCTCAGTTTTCTACCATCTATTCCCTC AACATGGAACACAATCGAATCAACAAAATTCCATTTGGAATTTTCTCCAGAGCAAAAGTA TTAAGTAAGCTGAATATGAAGGACAATCAGTTAACATCACTTCCCTTGGATTTTGGAACT TGGACCAGTATGGTAGAATTGAATTTAGCCACTAATCAGCTCACAAAGATCCCTGAGGAT GTGTCTGGTCTCGTTTCTCTTGAGGTTCTTATCTTATCAAACAATCTTCTAAAGAAGCTT CCCCATGGTCTTGGAAACCTTAGGAAGTTAAGAGAGTTGGATCTAGAAGAGAACAAATTG GAATCCTTGCCAAATGAAATTGCATATCTTAAGGATTTACAGAAATTAGTCTTGACAAAC AACCAGTTGACCACTCTTCCCAGAGGCATTGGTCACCTTACTAATCTCACACATCTGGGC CTTGGAGAGAACCTACTTACTCACCTTCCTGAAGAAATTGGTACACTGGAGAACCTAGAA GAACTGTATTTGAATGACAACCCCAACCTGCATAGCCTTCCCCTTGAGCTGGCACTCTGC AGCAAGCTTTCAATCATGAGTATTGAGAACTGTCCACTCAGTCACCTTCCACCTCAGATT GTTGCTGGGGGGCCTTCTTTCATCATTCAGTTCTTAAAGATGCAGGGTCCATATCGTGCC ATGGTC
Cloned ORF protein sequence for pF1KSDA0862 Download>KIAA0862 582 aa MSSSLGKEKDSKEKDPKVPSAKEREKEAKASGGFGKESKEKEPKTKGKDAKDGKKDSSAA QPGVAFSVDNTIKRPNPAPGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHILPSSIK ELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNK LREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGELCNL ITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIP RSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSL NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED VSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTN NQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPLELALC SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
Nucleotide Sequence (with vector) for pF1KSDA0862 Download>pF1KSDA0862 4885 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT AGAACCATGAGTAGTAGTTTAGGAAAAGAAAAAGACTCTAAAGAAAAAGATCCCAAAGTA CCATCAGCCAAGGAAAGAGAAAAGGAGGCAAAAGCCTCTGGAGGTTTTGGGAAAGAGAGC AAAGAAAAAGAACCTAAGACCAAAGGGAAAGATGCCAAAGATGGAAAGAAGGACTCCAGT GCTGCCCAACCAGGGGTGGCATTTTCAGTTGACAATACGATCAAACGGCCAAACCCAGCA CCTGGGACTAGAAAAAAATCCAGCAATGCAGAGGTGATTAAAGAGCTCAACAAATGCCGG GAAGAGAATTCAATGCGTTTGGACTTATCCAAGAGATCTATACACATATTGCCATCATCA ATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATACAGTAACAAATTGCAGTCCCTC CCAGCAGAGGTGGGATGTTTAGTAAATCTCATGACACTGGCTCTAAGTGAAAATTCACTT ACCAGTTTGCCTGACTCTCTTGATAACTTGAAGAAGCTGCGGATGCTTGATTTACGGCAT AATAAACTGAGAGAAATTCCTTCAGTGGTGTATAGGCTGGATTCTCTCACCACTCTTTAC CTTCGCTTTAATCGTATAACTACTGTGGAAAAGGACATCAAAAACTTGTCAAAACTCAGC ATGCTTAGCATTCGAGAGAACAAAATTAAACAACTACCTGCTGAAATTGGTGAATTATGT AACCTCATTACGCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGA AACTGTACACAGATAACCAACCTTGACTTGCAGCACAATGAACTGCTAGACCTCCCAGAT ACTATAGGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATATAACAGACTGTCAGCA ATACCCAGATCATTAGCAAAATGCAGTGCACTTGAAGAATTAAATTTAGAGAACAATAAC ATTTCTACTTTACCAGAGAGTCTTTTATCAAGTCTTGTGAAACTGAATAGTTTGACCTTA GCTAGAAATTGCTTCCAGTTGTATCCAGTGGGTGGTCCATCTCAGTTTTCTACCATCTAT TCCCTCAACATGGAACACAATCGAATCAACAAAATTCCATTTGGAATTTTCTCCAGAGCA AAAGTATTAAGTAAGCTGAATATGAAGGACAATCAGTTAACATCACTTCCCTTGGATTTT GGAACTTGGACCAGTATGGTAGAATTGAATTTAGCCACTAATCAGCTCACAAAGATCCCT GAGGATGTGTCTGGTCTCGTTTCTCTTGAGGTTCTTATCTTATCAAACAATCTTCTAAAG AAGCTTCCCCATGGTCTTGGAAACCTTAGGAAGTTAAGAGAGTTGGATCTAGAAGAGAAC AAATTGGAATCCTTGCCAAATGAAATTGCATATCTTAAGGATTTACAGAAATTAGTCTTG ACAAACAACCAGTTGACCACTCTTCCCAGAGGCATTGGTCACCTTACTAATCTCACACAT CTGGGCCTTGGAGAGAACCTACTTACTCACCTTCCTGAAGAAATTGGTACACTGGAGAAC CTAGAAGAACTGTATTTGAATGACAACCCCAACCTGCATAGCCTTCCCCTTGAGCTGGCA CTCTGCAGCAAGCTTTCAATCATGAGTATTGAGAACTGTCCACTCAGTCACCTTCCACCT CAGATTGTTGCTGGGGGGCCTTCTTTCATCATTCAGTTCTTAAAGATGCAGGGTCCATAT CGTGCCATGGTCTACGTAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAG TCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTT GGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTT GAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGC CCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGC GTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTG CGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCG GCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCC TGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGA TCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCA GGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATC GGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTC AAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGG CTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGG GACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCT GCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCT ACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAA GCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAA CTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGC GATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGT GGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCT GAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCC GATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGG GGTTCGCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTA ATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAG CAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCC CCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTA TAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTG CCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGC TCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCAC GAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAAC CCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCG AGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGA AGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGT AGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAG CAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCT GACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGG ATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTC GCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGG CCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGG CAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACG CGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGT AGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGAT CTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTG CCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGC CGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCA AATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGT GAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACG GCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAA GGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAA TACATTCAAATATGTATCCGCTCAT
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