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SpecieshumanProduct IDFXC00657Cloning SiteSgfI-PmeISymbolSLITRK3DescriptionSLIT and NTRK-like family, member 3
Length: 2931 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 977 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS3197.1 0 99.9 SLITRK3 CCDS9465.1 4.2e-79 42.2 SLITRK5 CCDS14680.1 5.5e-40 44.3 SLITRK2 CCDS14679.1 5.5e-37 45.8 SLITRK4 CCDS41903.1 7e-35 35.0 SLITRK6
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 197 210 PF00560 Leucine-rich repeat HMMSmart IPR003591 100 123 SM00369 Leucine-rich repeat IPR003591 124 147 SM00369 Leucine-rich repeat IPR003591 148 171 SM00369 Leucine-rich repeat IPR003591 172 195 SM00369 Leucine-rich repeat IPR003591 196 219 SM00369 Leucine-rich repeat IPR000483 232 282 SM00082 Cysteine-rich flanking region IPR003591 431 454 SM00369 Leucine-rich repeat IPR003591 455 478 SM00369 Leucine-rich repeat IPR003591 479 502 SM00369 Leucine-rich repeat IPR003591 503 526 SM00369 Leucine-rich repeat IPR000483 562 612 SM00082 Cysteine-rich flanking region
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 13 RMLWIILLSTIALGWTTPIPLIE 35 PRIMARY 23 2 654 SVLILSLLVLFFSAVFVAAGLFA 676 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_055741 977 609679 99.9 100.0 NP_001305739 977 609679 99.9 100.0 NP_001305740 977 609679 99.9 100.0 XP_005254096 958 609680 42.2 99.4 XP_005254095 958 609680 42.2 99.4 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KSDA0848 Download>KIAA0848 2931 bp ATGAAACCTTCCATAGCTGAGATGCTTCACAGAGGAAGGATGTTGTGGATAATTCTTCTA AGCACAATTGCTCTAGGATGGACTACCCCGATTCCCCTAATAGAGGACTCAGAGGAAATA GATGAGCCCTGTTTTGATCCATGCTACTGTGAAGTTAAAGAAAGCCTCTTTCATATACAT TGTGACAGTAAAGGATTTACAAATATTAGTCAGATTACCGAGTTCTGGTCAAGACCTTTT AAACTGTATCTGCAGAGGAATTCTATGAGGAAATTATATACCAACAGTTTTCTTCATTTG AATAATGCTGTGTCTATTAATCTTGGGAACAATGCATTGCAGGACATTCAGACTGGAGCT TTCAATGGTCTTAAGATTTTAAAGAGACTATATCTACATGAAAACAAACTAGATGTCTTC AGAAATGACACCTTCCTTGGCTTGGAAAGTCTAGAATATCTGCAGGCAGATTACAATGTC ATTAAACGTATTGAGAGTGGGGCATTTCGGAACCTAAGTAAATTGAGGGTTCTGATTTTA AATGATAATCTCATCCCCATGCTTCCAACCAATTTATTTAAGGCTGTCTCTTTAACCCAT TTGGACCTACGTGGAAATAGGTTAAAGGTTCTTTTTTACCGAGGAATGCTAGATCACATT GGCAGAAGCCTGATGGAGCTCCAGCTGGAAGAAAACCCTTGGAACTGTACATGTGAAATT GTACAACTGAAGAGTTGGCTGGAACGCATTCCTTATACTGCCCTGGTGGGAGACATTACC TGTGAGACCCCTTTCCACTTCCATGGAAAGGACCTACGAGAAATCAGGAAGACAGAACTC TGTCCCTTGTTGTCTGACTCTGAGGTAGAGGCTAGTTTGGGAATTCCACATTCGTCATCA AGTAAGGAGAATGCATGGCCAACTAAGCCTTCCTCAATGCTATCCTCTGTTCATTTTACT GCTTCTTCTGTCGAATACAAGTCCTCAAATAAACAGCCTAAGCCCACCAAACAGCCTCGA ACACCAAGGCCACCCTCCACCTCCCAAGCTTTATATCCTGGTCCAAACCAGCCTCCCATT GCTCCTTATCAGACCAGACCACCAATCCCCATTATATGCCCCACTGGGTGTACCTGTAAT TTGCACATCAATGACCTTGGCTTGACTGTCAACTGCAAAGAGCGAGGATTTAATAACATT TCTGAACTTCTTCCAAGGCCCTTGAATGCCAAGAAACTGTATCTGAGTAGCAATCTGATT CAGAAAATATACCGTTCTGATTTTTGGAATTTTTCTTCCTTGGATCTCTTGCATCTGGGG AACAATCGTATTTCCTATGTCCAAGATGGGGCCTTTATCAACTTGCCCAACTTAAAGAGC CTCTTCCTTAATGGCAACGATATAGAGAAGCTGACACCAGGCATGTTCCGAGGCCTACAG AGTTTGCACTACTTGTACTTTGAGTTCAATGTCATCCGGGAAATCCAGCCTGCAGCCTTC AGCCTCATGCCCAACTTGAAGCTGCTATTCCTCAATAATAACTTACTGAGGACTCTGCCA ACAGACGCCTTTGCTGGCACATCCCTGGCCCGGCTCAACCTGAGGAAGAACTACTTCCTC TATCTTCCCGTGGCTGGTGTCCTGGAACACTTGAATGCCATTGTCCAGATAGACCTCAAT GAGAATCCTTGGGACTGCACCTGTGACCTGGTCCCCTTTAAACAGTGGATCGAAACCATC AGCTCAGTCAGTGTGGTTGGTGATGTGCTTTGCAGGAGCCCTGAGAACCTCACGCACCGT GATGTGCGCACTATTGAGCTGGAAGTTCTTTGCCCAGAGATGCTGCACGTTGCACCAGCT GGAGAATCCCCAGCCCAGCCTGGAGATTCTCACCTTATTGGGGCACCAACCAGTGCATCA CCTTATGAGTTTTCTCCTCCTGGGGGCCCTGTGCCACTTTCTGTGTTAATTCTCAGCCTG CTGGTTCTGTTTTTCTCAGCAGTCTTTGTTGCTGCAGGCCTCTTTGCCTACGTGCTCCGA AGGCGTCGAAAGAAGCTGCCCTTCAGAAGCAAGCGGCAGGAAGGTGTGGACCTTACTGGC ATCCAAATGCAATGCCACAGGCTGTTTGAGGATGGTGGAGGTGGTGGTGGCGGAAGTGGG GGTGGTGGTCGACCAACTCTTTCCTCTCCAGAGAAGGCCCCTCCCGTGGGTCATGTGTAT GAGTACATCCCCCACCCGGTTACCCAAATGTGCAACAACCCCATCTACAAGCCTCGTGAG GAGGAGGAGGTGGCTGTTTCATCAGCCCAAGAAGCAGGGAGTGCAGAACGTGGGGGTCCA GGGACACAACCACCGGGAATGGGTGAGGCTCTCCTAGGAAGTGAGCAGTTTGCTGAGACA CCCAAGGAGAACCATAGTAACTACCGGACCTTGCTGGAAAAAGAGAAGGAGTGGGCCCTA GCAGTGTCCAGCTCCCAGCTTAACACCATAGTGACGGTGAATCACCATCACCCTCACCAC CCAGCAGTTGGTGGGGTTTCAGGAGTAGTTGGGGGAACTGGGGGAGACTTGGCAGGGTTC CGCCACCATGAGAAAAATGGTGGGGTGGTGCTGTTTCCTCCTGGGGGAGGCTGTGGTAGT GGCAGTATGCTACTAGATCGAGAGAGGCCACAGCCTGCCCCCTGCACAGTGGGATTTGTG GACTGTCTCTATGGAACAGTGCCCAAATTAAAGGAACTGCACGTGCACCCTCCTGGCATG CAATACCCAGACTTACAGCAGGATGCCAGGCTCAAAGAAACCCTTCTCTTCTCGGCTGAA AAGGGCTTCACAGACCACCAAACCCAAAAAAGTGATTACCTCGAGTTAAGGGCCAAACTT CAAACCAAGCCGGATTACCTCGAAGTCCTGGAGAAGACAACATACAGGTTC
Cloned ORF protein sequence for pF1KSDA0848 Download>KIAA0848 977 aa MKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIH CDSKGFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGA FNGLKILKRLYLHENKLDVFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLIL NDNLIPMLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEI VQLKSWLERIPYTALVGDITCETPFHFHGKDLREIRKTELCPLLSDSEVEASLGIPHSSS SKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPI APYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLI QKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQ SLHYLYFEFNVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFL YLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQWIETISSVSVVGDVLCRSPENLTHR DVRTIELEVLCPEMLHVAPAGESPAQPGDSHLIGAPTSASPYEFSPPGGPVPLSVLILSL LVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQCHRLFEDGGGGGGGSG GGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAVSSAQEAGSAERGGP GTQPPGMGEALLGSEQFAETPKENHSNYRTLLEKEKEWALAVSSSQLNTIVTVNHHHPHH PAVGGVSGVVGGTGGDLAGFRHHEKNGGVVLFPPGGGCGSGSMLLDRERPQPAPCTVGFV DCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAEKGFTDHQTQKSDYLELRAKL QTKPDYLEVLEKTTYRF
Nucleotide Sequence (with vector) for pF1KSDA0848 Download>pF1KSDA0848 6070 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT AGAACCATGAAACCTTCCATAGCTGAGATGCTTCACAGAGGAAGGATGTTGTGGATAATT CTTCTAAGCACAATTGCTCTAGGATGGACTACCCCGATTCCCCTAATAGAGGACTCAGAG GAAATAGATGAGCCCTGTTTTGATCCATGCTACTGTGAAGTTAAAGAAAGCCTCTTTCAT ATACATTGTGACAGTAAAGGATTTACAAATATTAGTCAGATTACCGAGTTCTGGTCAAGA CCTTTTAAACTGTATCTGCAGAGGAATTCTATGAGGAAATTATATACCAACAGTTTTCTT CATTTGAATAATGCTGTGTCTATTAATCTTGGGAACAATGCATTGCAGGACATTCAGACT GGAGCTTTCAATGGTCTTAAGATTTTAAAGAGACTATATCTACATGAAAACAAACTAGAT GTCTTCAGAAATGACACCTTCCTTGGCTTGGAAAGTCTAGAATATCTGCAGGCAGATTAC AATGTCATTAAACGTATTGAGAGTGGGGCATTTCGGAACCTAAGTAAATTGAGGGTTCTG ATTTTAAATGATAATCTCATCCCCATGCTTCCAACCAATTTATTTAAGGCTGTCTCTTTA ACCCATTTGGACCTACGTGGAAATAGGTTAAAGGTTCTTTTTTACCGAGGAATGCTAGAT CACATTGGCAGAAGCCTGATGGAGCTCCAGCTGGAAGAAAACCCTTGGAACTGTACATGT GAAATTGTACAACTGAAGAGTTGGCTGGAACGCATTCCTTATACTGCCCTGGTGGGAGAC ATTACCTGTGAGACCCCTTTCCACTTCCATGGAAAGGACCTACGAGAAATCAGGAAGACA GAACTCTGTCCCTTGTTGTCTGACTCTGAGGTAGAGGCTAGTTTGGGAATTCCACATTCG TCATCAAGTAAGGAGAATGCATGGCCAACTAAGCCTTCCTCAATGCTATCCTCTGTTCAT TTTACTGCTTCTTCTGTCGAATACAAGTCCTCAAATAAACAGCCTAAGCCCACCAAACAG CCTCGAACACCAAGGCCACCCTCCACCTCCCAAGCTTTATATCCTGGTCCAAACCAGCCT CCCATTGCTCCTTATCAGACCAGACCACCAATCCCCATTATATGCCCCACTGGGTGTACC TGTAATTTGCACATCAATGACCTTGGCTTGACTGTCAACTGCAAAGAGCGAGGATTTAAT AACATTTCTGAACTTCTTCCAAGGCCCTTGAATGCCAAGAAACTGTATCTGAGTAGCAAT CTGATTCAGAAAATATACCGTTCTGATTTTTGGAATTTTTCTTCCTTGGATCTCTTGCAT CTGGGGAACAATCGTATTTCCTATGTCCAAGATGGGGCCTTTATCAACTTGCCCAACTTA AAGAGCCTCTTCCTTAATGGCAACGATATAGAGAAGCTGACACCAGGCATGTTCCGAGGC CTACAGAGTTTGCACTACTTGTACTTTGAGTTCAATGTCATCCGGGAAATCCAGCCTGCA GCCTTCAGCCTCATGCCCAACTTGAAGCTGCTATTCCTCAATAATAACTTACTGAGGACT CTGCCAACAGACGCCTTTGCTGGCACATCCCTGGCCCGGCTCAACCTGAGGAAGAACTAC TTCCTCTATCTTCCCGTGGCTGGTGTCCTGGAACACTTGAATGCCATTGTCCAGATAGAC CTCAATGAGAATCCTTGGGACTGCACCTGTGACCTGGTCCCCTTTAAACAGTGGATCGAA ACCATCAGCTCAGTCAGTGTGGTTGGTGATGTGCTTTGCAGGAGCCCTGAGAACCTCACG CACCGTGATGTGCGCACTATTGAGCTGGAAGTTCTTTGCCCAGAGATGCTGCACGTTGCA CCAGCTGGAGAATCCCCAGCCCAGCCTGGAGATTCTCACCTTATTGGGGCACCAACCAGT GCATCACCTTATGAGTTTTCTCCTCCTGGGGGCCCTGTGCCACTTTCTGTGTTAATTCTC AGCCTGCTGGTTCTGTTTTTCTCAGCAGTCTTTGTTGCTGCAGGCCTCTTTGCCTACGTG CTCCGAAGGCGTCGAAAGAAGCTGCCCTTCAGAAGCAAGCGGCAGGAAGGTGTGGACCTT ACTGGCATCCAAATGCAATGCCACAGGCTGTTTGAGGATGGTGGAGGTGGTGGTGGCGGA AGTGGGGGTGGTGGTCGACCAACTCTTTCCTCTCCAGAGAAGGCCCCTCCCGTGGGTCAT GTGTATGAGTACATCCCCCACCCGGTTACCCAAATGTGCAACAACCCCATCTACAAGCCT CGTGAGGAGGAGGAGGTGGCTGTTTCATCAGCCCAAGAAGCAGGGAGTGCAGAACGTGGG GGTCCAGGGACACAACCACCGGGAATGGGTGAGGCTCTCCTAGGAAGTGAGCAGTTTGCT GAGACACCCAAGGAGAACCATAGTAACTACCGGACCTTGCTGGAAAAAGAGAAGGAGTGG GCCCTAGCAGTGTCCAGCTCCCAGCTTAACACCATAGTGACGGTGAATCACCATCACCCT CACCACCCAGCAGTTGGTGGGGTTTCAGGAGTAGTTGGGGGAACTGGGGGAGACTTGGCA GGGTTCCGCCACCATGAGAAAAATGGTGGGGTGGTGCTGTTTCCTCCTGGGGGAGGCTGT GGTAGTGGCAGTATGCTACTAGATCGAGAGAGGCCACAGCCTGCCCCCTGCACAGTGGGA TTTGTGGACTGTCTCTATGGAACAGTGCCCAAATTAAAGGAACTGCACGTGCACCCTCCT GGCATGCAATACCCAGACTTACAGCAGGATGCCAGGCTCAAAGAAACCCTTCTCTTCTCG GCTGAAAAGGGCTTCACAGACCACCAAACCCAAAAAAGTGATTACCTCGAGTTAAGGGCC AAACTTCAAACCAAGCCGGATTACCTCGAAGTCCTGGAGAAGACAACATACAGGTTCTAC GTAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCAT GCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGC TGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCT GAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCG CCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCA GATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTA CGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCA AAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGG ATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACA GGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCT TGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCC GCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCC GGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGC GTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTG GGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCC ATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGAC CACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGAT CAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTC AAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCG AATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTG GCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGC GAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATC GCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGCGAAATGAC CGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACA GAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAAC CGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCAC AAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCG TTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATAC CTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTAT CTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAG CCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGAC TTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGT GCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGT ATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGC AAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGA AAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAAC GAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATC CTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAA CCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGT TGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGG TTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCG TACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAA CCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATA CAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGC GCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGT AGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGC TCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAG TAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCG GGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA TGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGT ATCCGCTCAT
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