TRIM39 ORF clone FXC11796

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Flexi ORF Clone FXC11796

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Clone info.

Species

human

Clone Name

pF1KB8733 Sequence (with vector) Restriction Map

Product ID

FXC11796

HaloTag Clone PID

FHC11796

Original Clone PID

ORK11796

ORF Sequence

DNA sequence (1464 bp)
Protein sequence (488 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB587493]

Gene

KIBB8733

Symbol

TRIM39

Alias : RNF23, TFP, TRIM39B

Description

tripartite motif containing 39, transcript variant 2

Original Clone ID

ee03983

Features of the cloned ORF sequence

Description

Length: 1464 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 488 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS34378.1 2e-106 100.0 TRIM39 CCDS78121.1 7.7e-78 100.0 RPP21 CCDS34377.1 2e-55 94.2 TRIM39 CCDS3808.1 7.7e-40 43.1 TRIM60 CCDS44525.1 1.9e-36 41.8 TRIM21 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR003879 305 322 PR01407 Butyrophylin-like IPR003879 322 339 PR01407 Butyrophylin-like IPR003879 345 369 PR01407 Butyrophylin-like IPR003879 375 388 PR01407 Butyrophylin-like IPR003879 419 443 PR01407 Butyrophylin-like IPR003879 449 467 PR01407 Butyrophylin-like HMMPfam IPR018957 29 69 PF00097 Zinc finger IPR000315 103 143 PF00643 Zinc finger IPR003877 360 469 PF00622 SPla/RYanodine receptor SPRY HMMSmart IPR001841 29 69 SM00184 Zinc finger IPR000315 102 143 SM00336 Zinc finger IPR006574 306 359 SM00589 SPRY-associated IPR018355 360 485 SM00449 SPla/RYanodine receptor subgroup ProfileScan IPR001841 29 70 PS50089 Zinc finger IPR000315 102 143 PS50119 Zinc finger IPR001870 289 484 PS50188 B302/SPRY domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_742013 488 605700 100.0 100.0 NP_067076 518 605700 94.2 100.0 NP_003132 475 109092 41.8 96.1 NP_660215 468 607868 45.1 94.7 XP_016857901 467 607868 45.3 94.7 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8733 Download

>KIBB8733  1464 bp
ATGGCAGAGACAAGTCTGTTAGAGGCTGGGGCCTCTGCAGCCTCTACAGCTGCGGCTTTG
GAGAACTTACAGGTGGAGGCGAGCTGCTCTGTGTGCCTGGAGTATCTGAAGGAACCTGTC
ATCATTGAGTGTGGGCACAACTTCTGCAAAGCTTGCATCACCCGCTGGTGGGAGGACCTA
GAGAGGGACTTCCCTTGTCCTGTCTGTCGAAAGACATCCCGCTACCGCAGTCTCCGACCT
AATCGGCAACTAGGCAGTATGGTGGAAATTGCCAAGCAGCTCCAGGCCGTCAAGCGGAAG
ATCCGGGATGAGAGCCTCTGCCCCCAACACCATGAGGCCCTCAGCCTTTTCTGTTATGAG
GACCAGGAGGCTGTATGCTTGATATGTGCAATTTCCCACACCCACCGGGCCCACACCGTT
GTGCCACTGGACGATGCTACACAGGAGTACAAGGAAAAACTGCAGAAGTGTCTGGAGCCC
CTGGAACAGAAGCTGCAGGAGATCACTCGCTGCAAGTCCTCTGAGGAGAAGAAGCCTGGT
GAGCTCAAGAGACTAGTGGAAAGTCGCCGACAGCAGATCTTGAGGGAGTTTGAAGAGCTT
CATAGGCGGCTGGATGAAGAGCAGCAGGTGTTGCTTTCACGACTGGAAGAAGAGGAACAG
GACATTCTGCAGCGACTCCGAGAAAATGCTGCTCACCTTGGGGACAAGCGCCGGGACCTG
GCCCACTTGGCTGCCGAGGTGGAGGGCAAGTGCTTACAGTCAGGCTTCGAGATGCTTAAG
GATGTCAAAAGTACCCTGGAAAAATGTGAAAAGGTGAAGACCATGGAGGTGACTTCAGTA
TCCATAGAGCTGGAAAAGAACTTCAGCAATTTTCCCCGACAGTACTTTGCCCTAAGGAAA
ATCCTTAAACAGCTAATTGCGGATGTGACCCTGGACCCTGAGACAGCTCATCCTAACCTA
GTCCTGTCAGAGGATCGTAAGAGCGTCAAGTTCGTGGAGACAAGACTCCGGGATCTCCCT
GACACACCAAGGCGTTTCACCTTCTACCCTTGCGTCCTGGCTACTGAGGGTTTCACCTCA
GGTCGACACTACTGGGAGGTGGAGGTGGGCGACAAGACCCACTGGGCAGTGGGTGTATGC
CGGGACTCCGTGAGCCGAAAGGGCGAGTTGACTCCACTCCCTGAGACTGGCTACTGGCGG
GTGCGGCTATGGAATGGGGACAAATATGCAGCCACCACCACACCTTTTACCCCTTTGCAC
ATCAAGGTGAAACCCAAGCGGGTAGGCATATTCCTAGACTATGAGGCCGGCACACTGTCT
TTCTACAATGTCACAGACCGCTCTCATATCTACACCTTCACTGATACTTTTACTGAGAAA
CTTTGGCCCCTCTTCTACCCAGGCATCCGGGCTGGACGGAAGAATGCTGCACCACTTACC
ATCAGGCCCCCAACAGATTGGGAG

ORF Protein

Cloned ORF protein sequence for pF1KB8733 Download

>KIBB8733  488 aa
MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYE
DQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPG
ELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDL
AHLAAEVEGKCLQSGFEMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSNFPRQYFALRK
ILKQLIADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPRRFTFYPCVLATEGFTS
GRHYWEVEVGDKTHWAVGVCRDSVSRKGELTPLPETGYWRVRLWNGDKYAATTTPFTPLH
IKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEKLWPLFYPGIRAGRKNAAPLT
IRPPTDWE

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8733 Download

>pF1KB8733  4577 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCAGAGACA
AGTCTGTTAGAGGCTGGGGCCTCTGCAGCCTCTACAGCTGCGGCTTTGGAGAACTTACAG
GTGGAGGCGAGCTGCTCTGTGTGCCTGGAGTATCTGAAGGAACCTGTCATCATTGAGTGT
GGGCACAACTTCTGCAAAGCTTGCATCACCCGCTGGTGGGAGGACCTAGAGAGGGACTTC
CCTTGTCCTGTCTGTCGAAAGACATCCCGCTACCGCAGTCTCCGACCTAATCGGCAACTA
GGCAGTATGGTGGAAATTGCCAAGCAGCTCCAGGCCGTCAAGCGGAAGATCCGGGATGAG
AGCCTCTGCCCCCAACACCATGAGGCCCTCAGCCTTTTCTGTTATGAGGACCAGGAGGCT
GTATGCTTGATATGTGCAATTTCCCACACCCACCGGGCCCACACCGTTGTGCCACTGGAC
GATGCTACACAGGAGTACAAGGAAAAACTGCAGAAGTGTCTGGAGCCCCTGGAACAGAAG
CTGCAGGAGATCACTCGCTGCAAGTCCTCTGAGGAGAAGAAGCCTGGTGAGCTCAAGAGA
CTAGTGGAAAGTCGCCGACAGCAGATCTTGAGGGAGTTTGAAGAGCTTCATAGGCGGCTG
GATGAAGAGCAGCAGGTGTTGCTTTCACGACTGGAAGAAGAGGAACAGGACATTCTGCAG
CGACTCCGAGAAAATGCTGCTCACCTTGGGGACAAGCGCCGGGACCTGGCCCACTTGGCT
GCCGAGGTGGAGGGCAAGTGCTTACAGTCAGGCTTCGAGATGCTTAAGGATGTCAAAAGT
ACCCTGGAAAAATGTGAAAAGGTGAAGACCATGGAGGTGACTTCAGTATCCATAGAGCTG
GAAAAGAACTTCAGCAATTTTCCCCGACAGTACTTTGCCCTAAGGAAAATCCTTAAACAG
CTAATTGCGGATGTGACCCTGGACCCTGAGACAGCTCATCCTAACCTAGTCCTGTCAGAG
GATCGTAAGAGCGTCAAGTTCGTGGAGACAAGACTCCGGGATCTCCCTGACACACCAAGG
CGTTTCACCTTCTACCCTTGCGTCCTGGCTACTGAGGGTTTCACCTCAGGTCGACACTAC
TGGGAGGTGGAGGTGGGCGACAAGACCCACTGGGCAGTGGGTGTATGCCGGGACTCCGTG
AGCCGAAAGGGCGAGTTGACTCCACTCCCTGAGACTGGCTACTGGCGGGTGCGGCTATGG
AATGGGGACAAATATGCAGCCACCACCACACCTTTTACCCCTTTGCACATCAAGGTGAAA
CCCAAGCGGGTAGGCATATTCCTAGACTATGAGGCCGGCACACTGTCTTTCTACAATGTC
ACAGACCGCTCTCATATCTACACCTTCACTGATACTTTTACTGAGAAACTTTGGCCCCTC
TTCTACCCAGGCATCCGGGCTGGACGGAAGAATGCTGCACCACTTACCATCAGGCCCCCA
ACAGATTGGGAGGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACC
TGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGC
TGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGG
TTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTC
TAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTC
CCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACT
GGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCG
TGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAA
GTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGAT
CAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCT
CCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGC
TCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACC
GACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCC
ACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGG
CTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAG
AAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGC
CCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGT
CTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTC
GCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCC
TGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGG
CTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAG
CTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCG
CAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCG
AAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTT
ATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGC
CAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGA
GCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATA
CCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTAC
CGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTG
TAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCC
CGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAG
ACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGT
AGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGT
ATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTG
ATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTAC
GCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCA
GTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCAC
CTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGAT
GGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACC
CTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTT
CGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAG
CGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCG
AGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAG
CCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGG
CAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGC
CGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAC
GAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC
TCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAG
GGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCC
TGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCA
AATATGTATCCGCTCAT