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SpecieshumanProduct IDFXC10698Cloning SiteSgfI-PmeIGeneKIEE0009SymbolECM2Descriptionextracellular matrix protein 2, female organ and adipocyte specific, transcript variant 3Original Clone IDoc00709
Length: 1929 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 643 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS56578.1 1.4e-134 99.8 ECM2 CCDS6698.1 4.8e-94 96.1 ECM2 CCDS55601.1 4.7e-12 30.3 PODN CCDS55602.1 8.6e-11 31.2 PODN CCDS573.1 8.8e-11 31.2 PODN
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001007 103 157 PF00093 von Willebrand factor IPR001611 346 368 PF00560 Leucine-rich repeat IPR001611 514 531 PF00560 Leucine-rich repeat IPR001611 587 606 PF00560 Leucine-rich repeat HMMSmart IPR001007 103 157 SM00214 von Willebrand factor NULL 320 339 SM00364 NULL IPR003591 321 343 SM00369 Leucine-rich repeat IPR003591 344 369 SM00369 Leucine-rich repeat IPR003591 370 393 SM00369 Leucine-rich repeat NULL 391 415 SM00364 NULL IPR003591 394 414 SM00369 Leucine-rich repeat IPR003591 415 440 SM00369 Leucine-rich repeat IPR003591 441 464 SM00369 Leucine-rich repeat NULL 462 481 SM00364 NULL IPR003591 466 485 SM00369 Leucine-rich repeat NULL 512 531 SM00364 NULL IPR003591 513 535 SM00369 Leucine-rich repeat IPR003591 536 556 SM00369 Leucine-rich repeat IPR003591 585 607 SM00369 Leucine-rich repeat IPR003591 608 631 SM00369 Leucine-rich repeat ProfileScan IPR001007 101 158 PS50184 von Willebrand factor IPR001611 322 343 PS51450 Leucine-rich repeat IPR001611 346 366 PS51450 Leucine-rich repeat IPR001611 372 393 PS51450 Leucine-rich repeat IPR001611 394 414 PS51450 Leucine-rich repeat IPR001611 417 437 PS51450 Leucine-rich repeat IPR001611 464 485 PS51450 Leucine-rich repeat IPR001611 514 535 PS51450 Leucine-rich repeat IPR001611 536 556 PS51450 Leucine-rich repeat IPR001611 560 580 PS51450 Leucine-rich repeat IPR001611 587 608 PS51450 Leucine-rich repeat IPR001611 610 631 PS51450 Leucine-rich repeat
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 1 MKIAVLFCFFLLIIFQTDFGK 21 PRIMARY 21
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001184225 643 603479 99.8 100.0 NP_001184224 677 603479 99.5 97.0 NP_001384 699 603479 96.1 97.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0009 Download>KIEE0009 1929 bp ATGAAGATTGCAGTTTTGTTTTGTTTTTTTCTGCTTATCATTTTTCAAACTGACTTTGGA AAAAATGAAGAAATTCCTAGGAAGCAAAGGAGGAAGATCTACCACAGAAGGTTGAGGAAA AGTTCAACCTCACACAAGCACAGATCAAACAGACAGCTTGGAATTCCGCAAACAACAGTT TTTACACCAGTAGCAAGACTTCCTATTGTTAACTTTGATTATAGCATGGAGGAAAAGTTT GAATCCTTTTCAAGTTTTCCTGGAGTAGAATCAAGTTATAATGTGTTACCAGGAAAGAAG GGACACTGTTTGGTAAAGGGCATAACCATGTACAACAAAGCTGTGTGGTCGCCTGAGCCC TGCACTACCTGCCTCTGCTCAGATGGAAGAGTTCTTTGTGATGAAACCATGTGCCATCCC CAGAGGTGCCCCCAAACAGTTATACCTGAAGGGGAATGCTGCCCGGTCTGCTCCGCTACT GAACAAAGAGAACCTACCAATTTACTTCATAAGCAACTGCCACCTCCTCAGGTGGGAATG GACCGAATAGTAAGAAAAGAAGCACTTCAATCTGAGGAGGATGAAGAAGTGAAAGAAGAA GATACAGAGCAAAAGAGAGAGACCCCTGAATCTAGAAATCAGGGGCAACTTTACAGTGAG GGGGACAGCAGAGGAGGAGACAGAAAGCAGAGGCCTGGAGAGGAGAGGAGGCTGGCACAC CAGCAACAACGCCAAGGAAGGGAGGAGGAGGAGGATGAGGAGGAGGAGGGTGAGGAGGGT GAGGAGGATGAGGAGGACGAGGAGGACCCGGTAAGAGGAGATATGTTCCGAATGCCCTCT CGATCCCCGCTTCCTGCTCCTCCCAGAGGCACACTGCGCCTGCCAAGCGGGTGCTCTCTG TCCTACAGGACCATCAGCTGCATCAACGCCATGCTTACCCAGATACCACCGCTGACAGCA CCACAGATAACAAGTCTGGAGCTCACTGGCAATTCCATCGCCTCCATCCCAGATGAAGCA TTTAATGGATTACCAAATTTGGAAAGGCTTGATCTGAGTAAAAATAATATCACTTCTTCA GGCATAGGTCCAAAAGCATTCAAGCTTCTGAAGAAGTTAATGCGTTTGAATATGGATGGA AATAATTTGATACAGATTCCTTCACAATTGCCATCTACATTAGAAGAACTTAAAGTCAAT GAGAACAATCTTCAGGCTATCGATGAAGAAAGTTTATCGGACTTAAATCAGTTGGTCACC TTAGAATTGGAAGGAAACAATCTCAGTGAAGCCAATGTCAATCCTTTAGCTTTCAAACCT TTGAAGAGCCTAGCCTACTTGCGTCTGGGAAAAAATAAATTTAGAATTATACCGCAGGGT CTTCCTGGTTCTATTGAGGAATTATACCTAGAAAATAACCAAATTGAAGAAATAACTGAA ATTTGTTTCAATCATACCAGAAAGATCAATGTCATTGTACTACGTTATAACAAAATTGAA GAAAATAGGATTGCTCCTTTAGCCTGGATAAATCAAGAAAATCTAGAATCCATTGATCTC TCCTACAACAAGCTCTATCACGTCCCGTCCTATCTACCCAAGTCCTTGCTGCACCTAGTA CTCCTTGGGAACCAGATTGAACGGATCCCTGGCTATGTGTTTGGCCACATGGAACCAGGC CTGGAATACTTGTACCTGTCATTTAACAAACTTGCTGATGATGGCATGGACCGTGTCTCC TTCTATGGGGCATATCATTCTCTGAGAGAATTATTTCTGGATCACAATGACTTAAAATCT ATACCACCTGGGATACAAGAAATGAAAGCACTACATTTTCTGAGGCTGAACAACAACAAG ATACGCTGTGTTTCAGATGCTGTTCTAGAGACAGTGACAAACAGATCAGATGTGGCCTTT CCTCTCTGG
Cloned ORF protein sequence for pF1KE0009 Download>KIEE0009 643 aa MKIAVLFCFFLLIIFQTDFGKNEEIPRKQRRKIYHRRLRKSSTSHKHRSNRQLGIPQTTV FTPVARLPIVNFDYSMEEKFESFSSFPGVESSYNVLPGKKGHCLVKGITMYNKAVWSPEP CTTCLCSDGRVLCDETMCHPQRCPQTVIPEGECCPVCSATEQREPTNLLHKQLPPPQVGM DRIVRKEALQSEEDEEVKEEDTEQKRETPESRNQGQLYSEGDSRGGDRKQRPGEERRLAH QQQRQGREEEEDEEEEGEEGEEDEEDEEDPVRGDMFRMPSRSPLPAPPRGTLRLPSGCSL SYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPDEAFNGLPNLERLDLSKNNITSS GIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQAIDEESLSDLNQLVT LELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIPQGLPGSIEELYLENNQIEEITE ICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLV LLGNQIERIPGYVFGHMEPGLEYLYLSFNKLADDGMDRVSFYGAYHSLRELFLDHNDLKS IPPGIQEMKALHFLRLNNNKIRCVSDAVLETVTNRSDVAFPLW
Nucleotide Sequence (with vector) for pF1KE0009 Download>pF1KE0009 5042 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAAGATTGCA GTTTTGTTTTGTTTTTTTCTGCTTATCATTTTTCAAACTGACTTTGGAAAAAATGAAGAA ATTCCTAGGAAGCAAAGGAGGAAGATCTACCACAGAAGGTTGAGGAAAAGTTCAACCTCA CACAAGCACAGATCAAACAGACAGCTTGGAATTCCGCAAACAACAGTTTTTACACCAGTA GCAAGACTTCCTATTGTTAACTTTGATTATAGCATGGAGGAAAAGTTTGAATCCTTTTCA AGTTTTCCTGGAGTAGAATCAAGTTATAATGTGTTACCAGGAAAGAAGGGACACTGTTTG GTAAAGGGCATAACCATGTACAACAAAGCTGTGTGGTCGCCTGAGCCCTGCACTACCTGC CTCTGCTCAGATGGAAGAGTTCTTTGTGATGAAACCATGTGCCATCCCCAGAGGTGCCCC CAAACAGTTATACCTGAAGGGGAATGCTGCCCGGTCTGCTCCGCTACTGAACAAAGAGAA CCTACCAATTTACTTCATAAGCAACTGCCACCTCCTCAGGTGGGAATGGACCGAATAGTA AGAAAAGAAGCACTTCAATCTGAGGAGGATGAAGAAGTGAAAGAAGAAGATACAGAGCAA AAGAGAGAGACCCCTGAATCTAGAAATCAGGGGCAACTTTACAGTGAGGGGGACAGCAGA GGAGGAGACAGAAAGCAGAGGCCTGGAGAGGAGAGGAGGCTGGCACACCAGCAACAACGC CAAGGAAGGGAGGAGGAGGAGGATGAGGAGGAGGAGGGTGAGGAGGGTGAGGAGGATGAG GAGGACGAGGAGGACCCGGTAAGAGGAGATATGTTCCGAATGCCCTCTCGATCCCCGCTT CCTGCTCCTCCCAGAGGCACACTGCGCCTGCCAAGCGGGTGCTCTCTGTCCTACAGGACC ATCAGCTGCATCAACGCCATGCTTACCCAGATACCACCGCTGACAGCACCACAGATAACA AGTCTGGAGCTCACTGGCAATTCCATCGCCTCCATCCCAGATGAAGCATTTAATGGATTA CCAAATTTGGAAAGGCTTGATCTGAGTAAAAATAATATCACTTCTTCAGGCATAGGTCCA AAAGCATTCAAGCTTCTGAAGAAGTTAATGCGTTTGAATATGGATGGAAATAATTTGATA CAGATTCCTTCACAATTGCCATCTACATTAGAAGAACTTAAAGTCAATGAGAACAATCTT CAGGCTATCGATGAAGAAAGTTTATCGGACTTAAATCAGTTGGTCACCTTAGAATTGGAA GGAAACAATCTCAGTGAAGCCAATGTCAATCCTTTAGCTTTCAAACCTTTGAAGAGCCTA GCCTACTTGCGTCTGGGAAAAAATAAATTTAGAATTATACCGCAGGGTCTTCCTGGTTCT ATTGAGGAATTATACCTAGAAAATAACCAAATTGAAGAAATAACTGAAATTTGTTTCAAT CATACCAGAAAGATCAATGTCATTGTACTACGTTATAACAAAATTGAAGAAAATAGGATT GCTCCTTTAGCCTGGATAAATCAAGAAAATCTAGAATCCATTGATCTCTCCTACAACAAG CTCTATCACGTCCCGTCCTATCTACCCAAGTCCTTGCTGCACCTAGTACTCCTTGGGAAC CAGATTGAACGGATCCCTGGCTATGTGTTTGGCCACATGGAACCAGGCCTGGAATACTTG TACCTGTCATTTAACAAACTTGCTGATGATGGCATGGACCGTGTCTCCTTCTATGGGGCA TATCATTCTCTGAGAGAATTATTTCTGGATCACAATGACTTAAAATCTATACCACCTGGG ATACAAGAAATGAAAGCACTACATTTTCTGAGGCTGAACAACAACAAGATACGCTGTGTT TCAGATGCTGTTCTAGAGACAGTGACAAACAGATCAGATGTGGCCTTTCCTCTCTGGGTT TAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGC TGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCA ATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGG AGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGT AAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGC CCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTT CCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAA TTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCT TTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGA CGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTG GAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTG TTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCC CTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCT TGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAA GTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATG GCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAA GCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGAT GATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCG CGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATC ATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGAC CGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGG GCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTC TATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAG CGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGG GGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAA GGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCG ACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCC TGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGC CTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTC GGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCG CTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCC ACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGA GTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGC TCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAAC CACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGG ATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTC ACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATA GTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAA AATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGG TATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGC CATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTA AGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTA CTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAA ATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGG GTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA AAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAA ATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAC GCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTT TTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTC AT
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