Gene/Protein Characteristic Table for FXC10483

Species
human

Product ID
FXC10483

Corresponding
HaloTag Clone PID

Original Clone PID

ORF Sequence
DNA sequence (2331 bp)
Protein sequence (777 aa)

Linker Type
Flexi type
The extra Val codon is attached to the 3'-end of the ORF, because a Pme I site ...

Cloning Site
SgfI-PmeI

GenBank Accession
ORF sequence is derived from [AB527290]

Gene
KIBB9466

Symbol
NR3C1
Alias : GCCR, GCR, GR, GRL

Description
nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)

Original Clone ID
ee21768

Features of the cloned ORF sequence

Length: 2331 bp
Restriction map A Restriction map B
Genomic Structure
Features of the protein sequence

Length: 777 aa
Result of homology search against nr database ( FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
NP_000167 0 100.0 glucocorticoid ...
Homo sapiens
BAD97314 0 99.9 nuclear recepto...
Homo sapiens
CAE45716 0 99.9 hypothetical pr...
Homo sapiens
NP_001019265 0 99.9 glucocorticoid ...
Homo sapiens
XP_003829144 0 99.7 glucocorticoid ...
Pan paniscus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ] PD000035 PR00528 PR00528 PR00528 PR00528 PR00528 PR00528 PR00047 PR00047 PR00047 PR00047 PR00398 PR00398 PR00398 PR00398 PF02155 PF00105 PF00104 SM00399 SM00430 PS51030 PS00031

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001628 420 487 PD000035 Zinc finger
FPrintScan IPR001409 26 46 PR00528 Glucocorticoid receptor
IPR001409 76 96 PR00528 Glucocorticoid receptor
IPR001409 109 129 PR00528 Glucocorticoid receptor
IPR001409 275 296 PR00528 Glucocorticoid receptor
IPR001409 322 340 PR00528 Glucocorticoid receptor
IPR001409 382 401 PR00528 Glucocorticoid receptor
IPR001628 421 437 PR00047 Zinc finger
IPR001628 437 452 PR00047 Zinc finger
IPR001628 470 478 PR00047 Zinc finger
IPR001628 478 486 PR00047 Zinc finger
IPR001723 482 492 PR00398 Steroid hormone receptor
IPR001723 566 587 PR00398 Steroid hormone receptor
IPR001723 587 603 PR00398 Steroid hormone receptor
IPR001723 656 671 PR00398 Steroid hormone receptor
HMMPfam IPR001409 26 401 PF02155 Glucocorticoid receptor
IPR001628 419 494 PF00105 Zinc finger
IPR000536 568 756 PF00104 Nuclear hormone receptor
HMMSmart IPR001628 418 489 SM00399 Zinc finger
IPR000536 565 729 SM00430 Nuclear hormone receptor
ProfileScan IPR001628 418 493 PS51030 Zinc finger
ScanRegExp IPR001628 421 447 PS00031 Zinc finger

Result of homology search against disease genes in OMIM database
(FASTA output, Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%)
NP_001018085 777 138040 100.0 100.0
NP_001018086 777 138040 100.0 100.0
NP_001018087 777 138040 100.0 100.0
NP_001018084 777 138040 100.0 100.0
NP_000167 777 138040 100.0 100.0
Inquiries or Suggestions ?
Send a message to office AT kazusa.or.jp