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SpecieshumanProduct IDFXC07731Cloning SiteSgfI-PmeIGeneKIBB8963SymbolMTNR1A
Alias : MEL-1A-R, MT1Descriptionmelatonin receptor 1AOriginal Clone IDcp00998
Length: 1050 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 350 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS3848.1 3.5e-109 99.7 MTNR1A CCDS8290.1 1.5e-63 61.2 MTNR1B CCDS44012.1 4.7e-51 51.1 GPR50 CCDS12012.1 4.7e-17 28.8 GALR1 CCDS55069.1 5.1e-17 25.8 OPRM1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002278 5 20 PR01149 Melatonin receptor type 1A IPR002278 22 36 PR01149 Melatonin receptor type 1A IPR000276 29 53 PR00237 GPCR IPR000276 62 83 PR00237 GPCR IPR000276 107 129 PR00237 GPCR IPR000025 132 147 PR00857 Melatonin receptor IPR000276 143 164 PR00237 GPCR IPR000025 162 177 PR00857 Melatonin receptor IPR000025 177 195 PR00857 Melatonin receptor IPR000276 188 211 PR00237 GPCR IPR000025 214 228 PR00857 Melatonin receptor IPR002278 222 234 PR01149 Melatonin receptor type 1A IPR000025 230 244 PR00857 Melatonin receptor IPR000276 236 260 PR00237 GPCR IPR000025 255 265 PR00857 Melatonin receptor IPR002278 261 270 PR01149 Melatonin receptor type 1A IPR000025 269 281 PR00857 Melatonin receptor IPR000276 277 303 PR00237 GPCR IPR002278 317 332 PR01149 Melatonin receptor type 1A IPR002278 334 349 PR01149 Melatonin receptor type 1A HMMPfam IPR000276 44 295 PF00001 GPCR ProfileScan IPR017452 44 295 PS50262 GPCR
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 28 SALACVLIFTIVVDILGNLLVIL 50 PRIMARY 23 2 65 FVVSLAVADLVVAIYPYPLVLMS 87 PRIMARY 23 3 98 LHCQVSGFLMGLSVIGSIFNITG 120 SECONDARY 23 4 143 NSLCYVLLIWLLTLAAVLPNLRA 165 PRIMARY 23 5 191 VVVFHFLVPMIIVIFCYLRIWIL 213 PRIMARY 23 6 240 MFVVFVLFAICWAPLNFIGLAVA 262 PRIMARY 23 7 276 LFVASYYMAYFNSCLNAIIYGLL 298 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005949 350 600665 99.7 100.0 NP_005950 362 125853,600804 61.2 95.7 XP_011541141 362 125853,600804 61.2 95.7 XP_016873266 320 125853,600804 56.4 89.1 NP_004215 617 300207 51.1 87.1 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB8963 Download>KIBB8963 1050 bp ATGCAGGGCAACGGCAGCGCGCTGCCCAACGCCTCCCAGCCCGTGCTCCGCGGGGACGGC GCGCGGCCCTCGTGGCTGGCGTCCGCCCTGGCCTGCGTCCTCATCTTCACCATCGTGGTG GACATCCTGGGCAACCTCCTGGTCATCCTGTCGGTGTATCGGAACAAGAAGCTCAGGAAC GCAGGAAACATCTTTGTGGTGAGCTTAGCGGTGGCAGACCTGGTGGTGGCCATTTATCCG TACCCGTTGGTGCTGATGTCGATATTTAACAACGGGTGGAACCTGGGCTATCTGCACTGC CAAGTCAGTGGGTTCCTGATGGGCCTGAGCGTCATCGGCTCCATATTCAACATCACCGGC ATCGCCATCAACCGCTACTGCTACATCTGCCACAGTCTCAAGTACGACAAACTGTACAGC AGCAAGAACTCCCTCTGCTACGTGCTCCTCATATGGCTCCTGACGCTGGCGGCCGTCCTG CCCAACCTCCGTGCAGAGACTCTCCAGTACGACCCGAGGATCTACTCGTGCACCTTCGCC CAGTCCGTCAGCTCCGCCTACACCATCGCCGTGGTGGTTTTCCACTTCCTCGTCCCCATG ATCATAGTCATCTTCTGTTACCTGAGAATATGGATCCTGGTTCTCCAGGTCAGACAGAGG GTGAAACCTGACCGCAAACCCAAACTGAAACCACAGGACTTCAGGAATTTTGTCACCATG TTTGTGGTTTTTGTCCTTTTTGCCATTTGCTGGGCTCCTCTGAACTTCATTGGCCTGGCC GTGGCCTCTGACCCCGCCAGCATGGTGCCTAGGATCCCAGAGTGGCTGTTTGTGGCCAGT TACTACATGGCGTATTTCAACAGCTGCCTCAATGCCATTATATACGGGCTACTGAACCAA AATTTCAGGAAGGAATACAGGAGAATTATAGTCTCGCTCTGTACAGCCAGGGTGTTCTTT GTGGACAGCTCTAACGACGTGGCCGATAGGGTTAAATGGAAACCGTCTCCACTGATGACC AACAATAATGTAGTAAAGGTGGACTCCGTT
Cloned ORF protein sequence for pF1KB8963 Download>KIBB8963 350 aa MQGNGSALPNASQPVLRGDGARPSWLASALACVLIFTIVVDILGNLLVILSVYRNKKLRN AGNIFVVSLAVADLVVAIYPYPLVLMSIFNNGWNLGYLHCQVSGFLMGLSVIGSIFNITG IAINRYCYICHSLKYDKLYSSKNSLCYVLLIWLLTLAAVLPNLRAETLQYDPRIYSCTFA QSVSSAYTIAVVVFHFLVPMIIVIFCYLRIWILVLQVRQRVKPDRKPKLKPQDFRNFVTM FVVFVLFAICWAPLNFIGLAVASDPASMVPRIPEWLFVASYYMAYFNSCLNAIIYGLLNQ NFRKEYRRIIVSLCTARVFFVDSSNDVADRVKWKPSPLMTNNNVVKVDSV
Nucleotide Sequence (with vector) for pF1KB8963 Download>pF1KB8963 4163 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGCAGGGCAAC GGCAGCGCGCTGCCCAACGCCTCCCAGCCCGTGCTCCGCGGGGACGGCGCGCGGCCCTCG TGGCTGGCGTCCGCCCTGGCCTGCGTCCTCATCTTCACCATCGTGGTGGACATCCTGGGC AACCTCCTGGTCATCCTGTCGGTGTATCGGAACAAGAAGCTCAGGAACGCAGGAAACATC TTTGTGGTGAGCTTAGCGGTGGCAGACCTGGTGGTGGCCATTTATCCGTACCCGTTGGTG CTGATGTCGATATTTAACAACGGGTGGAACCTGGGCTATCTGCACTGCCAAGTCAGTGGG TTCCTGATGGGCCTGAGCGTCATCGGCTCCATATTCAACATCACCGGCATCGCCATCAAC CGCTACTGCTACATCTGCCACAGTCTCAAGTACGACAAACTGTACAGCAGCAAGAACTCC CTCTGCTACGTGCTCCTCATATGGCTCCTGACGCTGGCGGCCGTCCTGCCCAACCTCCGT GCAGAGACTCTCCAGTACGACCCGAGGATCTACTCGTGCACCTTCGCCCAGTCCGTCAGC TCCGCCTACACCATCGCCGTGGTGGTTTTCCACTTCCTCGTCCCCATGATCATAGTCATC TTCTGTTACCTGAGAATATGGATCCTGGTTCTCCAGGTCAGACAGAGGGTGAAACCTGAC CGCAAACCCAAACTGAAACCACAGGACTTCAGGAATTTTGTCACCATGTTTGTGGTTTTT GTCCTTTTTGCCATTTGCTGGGCTCCTCTGAACTTCATTGGCCTGGCCGTGGCCTCTGAC CCCGCCAGCATGGTGCCTAGGATCCCAGAGTGGCTGTTTGTGGCCAGTTACTACATGGCG TATTTCAACAGCTGCCTCAATGCCATTATATACGGGCTACTGAACCAAAATTTCAGGAAG GAATACAGGAGAATTATAGTCTCGCTCTGTACAGCCAGGGTGTTCTTTGTGGACAGCTCT AACGACGTGGCCGATAGGGTTAAATGGAAACCGTCTCCACTGATGACCAACAATAATGTA GTAAAGGTGGACTCCGTTGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAG TCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTT GGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTT GAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGC CCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGC GTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTG CGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCG GCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCC TGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGA TCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCA GGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATC GGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTC AAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGG CTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGG GACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCT GCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCT ACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAA GCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAA CTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGC GATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGT GGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCT GAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCC GATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGG GGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAAT ACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCA AAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCC TGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATA AAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCC GCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTC ACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGA ACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCC GGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAG GTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAG GACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAG CTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCA GATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGA CGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGAT CTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGC TGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCC TGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCA GTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCG TTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAG CCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT TTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCC TGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG TAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAA TAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGA ACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGC CCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGG CCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATA CATTCAAATATGTATCCGCTCAT
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